Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC15.72■□□□□ 0.11
Lmx1bO88609 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lmx1bO88609 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lmx1bO88609 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lmx1bO88609 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lmx1bO88609 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lmx1bO88609 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Lmx1bO88609 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Gm4974-201ENSMUST00000209974 875 ntBASIC15.71■□□□□ 0.11
Lmx1bO88609 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Lmx1bO88609 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Lmx1bO88609 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC15.7■□□□□ 0.1
Lmx1bO88609 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC15.7■□□□□ 0.1
Lmx1bO88609 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC15.7■□□□□ 0.1
Lmx1bO88609 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Lmx1bO88609 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Lmx1bO88609 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lmx1bO88609 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC15.69■□□□□ 0.1
Lmx1bO88609 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC15.69■□□□□ 0.1
Lmx1bO88609 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC15.69■□□□□ 0.1
Lmx1bO88609 Gm38027-201ENSMUST00000192315 235 ntBASIC15.69■□□□□ 0.1
Lmx1bO88609 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC15.69■□□□□ 0.1
Lmx1bO88609 AC159205.6-201ENSMUST00000224935 887 ntBASIC15.69■□□□□ 0.1
Lmx1bO88609 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Lmx1bO88609 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Lmx1bO88609 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Lmx1bO88609 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Lmx1bO88609 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC15.69■□□□□ 0.1
Lmx1bO88609 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Lmx1bO88609 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Gm37194-201ENSMUST00000193092 3031 ntBASIC15.69■□□□□ 0.1
Lmx1bO88609 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lmx1bO88609 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lmx1bO88609 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Lmx1bO88609 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lmx1bO88609 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Lmx1bO88609 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC15.68■□□□□ 0.1
Lmx1bO88609 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lmx1bO88609 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lmx1bO88609 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Lmx1bO88609 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Lmx1bO88609 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lmx1bO88609 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Lmx1bO88609 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC15.68■□□□□ 0.1
Lmx1bO88609 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lmx1bO88609 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lmx1bO88609 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lmx1bO88609 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lmx1bO88609 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Lmx1bO88609 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC15.68■□□□□ 0.1
Lmx1bO88609 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Lmx1bO88609 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC15.67■□□□□ 0.1
Lmx1bO88609 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC15.67■□□□□ 0.1
Lmx1bO88609 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms