Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Col5a1O88207 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC15.69■□□□□ 0.1
Col5a1O88207 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.69■□□□□ 0.1
Col5a1O88207 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Col5a1O88207 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Col5a1O88207 Gm7063-201ENSMUST00000186840 981 ntBASIC15.68■□□□□ 0.1
Col5a1O88207 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col5a1O88207 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC15.68■□□□□ 0.1
Col5a1O88207 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col5a1O88207 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col5a1O88207 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col5a1O88207 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col5a1O88207 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col5a1O88207 Mir770-201ENSMUST00000103252 94 ntBASIC15.68■□□□□ 0.1
Col5a1O88207 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col5a1O88207 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col5a1O88207 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC15.68■□□□□ 0.1
Col5a1O88207 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col5a1O88207 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col5a1O88207 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col5a1O88207 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col5a1O88207 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col5a1O88207 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col5a1O88207 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
Col5a1O88207 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col5a1O88207 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col5a1O88207 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC15.67■□□□□ 0.1
Col5a1O88207 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col5a1O88207 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC15.67■□□□□ 0.1
Col5a1O88207 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col5a1O88207 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC15.66■□□□□ 0.1
Col5a1O88207 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col5a1O88207 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col5a1O88207 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Col5a1O88207 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC15.66■□□□□ 0.1
Col5a1O88207 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col5a1O88207 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col5a1O88207 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC15.66■□□□□ 0.1
Col5a1O88207 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Col5a1O88207 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col5a1O88207 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col5a1O88207 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col5a1O88207 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col5a1O88207 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col5a1O88207 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC15.66■□□□□ 0.1
Col5a1O88207 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col5a1O88207 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC15.66■□□□□ 0.1
Col5a1O88207 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Col5a1O88207 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col5a1O88207 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Col5a1O88207 Actl10-202ENSMUST00000226583 1501 ntBASIC15.65■□□□□ 0.1
Col5a1O88207 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col5a1O88207 Gm19721-201ENSMUST00000195284 1764 ntBASIC15.65■□□□□ 0.1
Col5a1O88207 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC15.65■□□□□ 0.1
Col5a1O88207 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC15.65■□□□□ 0.1
Col5a1O88207 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC15.65■□□□□ 0.1
Col5a1O88207 Gm3272-201ENSMUST00000181181 1229 ntBASIC15.65■□□□□ 0.1
Col5a1O88207 Gm37722-201ENSMUST00000193757 208 ntBASIC15.65■□□□□ 0.1
Col5a1O88207 AC154621.1-201ENSMUST00000226155 1119 ntBASIC15.65■□□□□ 0.1
Col5a1O88207 Gm10566-201ENSMUST00000086739 996 ntBASIC15.65■□□□□ 0.1
Col5a1O88207 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Col5a1O88207 Grk6-206ENSMUST00000224995 2971 ntBASIC15.65■□□□□ 0.1
Col5a1O88207 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col5a1O88207 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col5a1O88207 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col5a1O88207 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC15.64■□□□□ 0.09
Col5a1O88207 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Col5a1O88207 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Cxcl14-202ENSMUST00000224801 1467 ntBASIC15.64■□□□□ 0.09
Col5a1O88207 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC15.64■□□□□ 0.09
Col5a1O88207 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Olfr129-201ENSMUST00000122318 993 ntBASIC15.64■□□□□ 0.09
Col5a1O88207 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col5a1O88207 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col5a1O88207 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 73.9 ms