Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smarce1O54941 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC20.69■□□□□ 0.9
Smarce1O54941 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
Smarce1O54941 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smarce1O54941 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarce1O54941 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarce1O54941 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Smarce1O54941 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarce1O54941 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Smarce1O54941 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Smarce1O54941 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarce1O54941 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarce1O54941 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.68■□□□□ 0.9
Smarce1O54941 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Smarce1O54941 Gm8495-201ENSMUST00000188740 694 ntBASIC20.68■□□□□ 0.9
Smarce1O54941 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Smarce1O54941 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.68■□□□□ 0.9
Smarce1O54941 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Smarce1O54941 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC20.68■□□□□ 0.9
Smarce1O54941 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Smarce1O54941 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Smarce1O54941 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarce1O54941 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Smarce1O54941 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC20.67■□□□□ 0.9
Smarce1O54941 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Smarce1O54941 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarce1O54941 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarce1O54941 Gm11643-201ENSMUST00000119578 864 ntBASIC20.67■□□□□ 0.9
Smarce1O54941 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Smarce1O54941 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarce1O54941 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarce1O54941 Mir6349-201ENSMUST00000184059 97 ntBASIC20.67■□□□□ 0.9
Smarce1O54941 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarce1O54941 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Smarce1O54941 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Smarce1O54941 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarce1O54941 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Smarce1O54941 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 Gm13401-201ENSMUST00000117074 291 ntBASIC20.66■□□□□ 0.9
Smarce1O54941 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.66■□□□□ 0.9
Smarce1O54941 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.66■□□□□ 0.9
Smarce1O54941 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Smarce1O54941 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC20.66■□□□□ 0.9
Smarce1O54941 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Smarce1O54941 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarce1O54941 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Smarce1O54941 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Smarce1O54941 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarce1O54941 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smarce1O54941 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarce1O54941 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC20.65■□□□□ 0.9
Smarce1O54941 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Smarce1O54941 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarce1O54941 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smarce1O54941 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarce1O54941 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarce1O54941 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Smarce1O54941 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarce1O54941 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smarce1O54941 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smarce1O54941 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC20.64■□□□□ 0.9
Smarce1O54941 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC20.64■□□□□ 0.9
Smarce1O54941 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Smarce1O54941 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarce1O54941 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarce1O54941 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.64■□□□□ 0.89
Smarce1O54941 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarce1O54941 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Smarce1O54941 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarce1O54941 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarce1O54941 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Smarce1O54941 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarce1O54941 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Smarce1O54941 Gm45244-201ENSMUST00000211328 2200 ntBASIC20.63■□□□□ 0.89
Smarce1O54941 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Smarce1O54941 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
Smarce1O54941 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC20.63■□□□□ 0.89
Smarce1O54941 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarce1O54941 Gm27405-201ENSMUST00000184201 112 ntBASIC20.63■□□□□ 0.89
Smarce1O54941 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarce1O54941 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Smarce1O54941 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Smarce1O54941 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Smarce1O54941 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarce1O54941 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarce1O54941 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarce1O54941 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarce1O54941 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarce1O54941 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Smarce1O54941 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms