Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Hmgb3O54879 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Hmgb3O54879 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Hmgb3O54879 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Hmgb3O54879 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
Hmgb3O54879 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC14.45□□□□□ -0.1
Hmgb3O54879 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC14.45□□□□□ -0.1
Hmgb3O54879 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC14.45□□□□□ -0.1
Hmgb3O54879 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC14.45□□□□□ -0.1
Hmgb3O54879 Gm8969-201ENSMUST00000199694 526 ntBASIC14.45□□□□□ -0.1
Hmgb3O54879 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Hmgb3O54879 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC14.45□□□□□ -0.1
Hmgb3O54879 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Hmgb3O54879 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Hmgb3O54879 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Hmgb3O54879 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Hmgb3O54879 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
Hmgb3O54879 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Hmgb3O54879 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC14.44□□□□□ -0.1
Hmgb3O54879 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC14.43□□□□□ -0.1
Hmgb3O54879 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC14.43□□□□□ -0.1
Hmgb3O54879 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Hmgb3O54879 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
Hmgb3O54879 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Hmgb3O54879 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Hmgb3O54879 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Hmgb3O54879 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC14.43□□□□□ -0.1
Hmgb3O54879 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Hmgb3O54879 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC14.42□□□□□ -0.1
Hmgb3O54879 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC14.42□□□□□ -0.1
Hmgb3O54879 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC14.42□□□□□ -0.1
Hmgb3O54879 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC14.42□□□□□ -0.1
Hmgb3O54879 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC14.42□□□□□ -0.1
Hmgb3O54879 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC14.42□□□□□ -0.1
Hmgb3O54879 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Hmgb3O54879 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC14.42□□□□□ -0.1
Hmgb3O54879 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Hmgb3O54879 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hmgb3O54879 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms