Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdhgb8A0A140LI48 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdhgb8A0A140LI48 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Pcdhgb8A0A140LI48 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdhgb8A0A140LI48 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdhgb8A0A140LI48 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdhgb8A0A140LI48 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Pcdhgb8A0A140LI48 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
Pcdhgb8A0A140LI48 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Gm44672-201ENSMUST00000206944 1098 ntBASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Pcdhgb8A0A140LI48 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 AC160393.1-201ENSMUST00000218378 1279 ntBASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Hivep3-201ENSMUST00000084306 2973 ntBASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdhgb8A0A140LI48 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 AC135637.1-201ENSMUST00000227750 365 ntBASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdhgb8A0A140LI48 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Gm22240-201ENSMUST00000175225 82 ntBASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Gm37856-201ENSMUST00000191634 999 ntBASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdhgb8A0A140LI48 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Pcdhgb8A0A140LI48 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC15.66■□□□□ 0.1
Pcdhgb8A0A140LI48 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 55.8 ms