Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm37288-201ENSMUST00000193963 334 ntBASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Smcp-201ENSMUST00000098888 861 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr1066-201ENSMUST00000099885 942 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr1042-202ENSMUST00000215624 5096 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Evi2b-201ENSMUST00000179322 1858 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Mannr-201ENSMUST00000193549 1438 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr1167-202ENSMUST00000216951 4276 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Gm43300-201ENSMUST00000198540 2043 ntBASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Gm18609-201ENSMUST00000203370 3601 ntBASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Mkln1-201ENSMUST00000026699 11395 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr986-203ENSMUST00000216720 3381 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr1224-ps1-206ENSMUST00000216976 2019 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Depdc1a-201ENSMUST00000029825 2920 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr1296-ps1-201ENSMUST00000117697 939 ntBASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Gm29318-201ENSMUST00000185308 975 ntTSL 5 BASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Gm28785-201ENSMUST00000187478 379 ntBASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Gm43525-201ENSMUST00000196460 616 ntTSL 2 BASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr439-ps1-201ENSMUST00000204679 307 ntBASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Gm36816-202ENSMUST00000205197 504 ntTSL 5 BASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr337-ps1-202ENSMUST00000213375 526 ntBASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 RMST_1.1-212ENSMUST00000220192 413 ntTSL 3 BASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 AC124537.1-201ENSMUST00000222890 159 ntBASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 4933436I01Rik-201ENSMUST00000026325 1426 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr1028-201ENSMUST00000080698 3474 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Gm34549-201ENSMUST00000207057 1611 ntTSL 5 BASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Gm20631-201ENSMUST00000177239 5697 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Atp1b4-201ENSMUST00000016471 4201 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
Ccdc88bQ4QRL3 Traj17-201ENSMUST00000103724 63 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm36991-201ENSMUST00000191800 648 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm18384-201ENSMUST00000195974 808 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm43355-201ENSMUST00000196541 346 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm42666-201ENSMUST00000201954 152 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm18644-201ENSMUST00000211458 815 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 AC153370.1-201ENSMUST00000220296 635 ntTSL 5 BASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 4930455B14Rik-204ENSMUST00000224776 848 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm22249-201ENSMUST00000082485 136 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm14667-201ENSMUST00000119448 1350 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 4931412I15Rik-201ENSMUST00000207844 1448 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm6300-201ENSMUST00000192393 1498 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Clhc1-204ENSMUST00000208530 2062 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Skint5-203ENSMUST00000170105 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Matr3-201ENSMUST00000166793 6262 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr361-202ENSMUST00000214969 2749 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr111-202ENSMUST00000214259 2620 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm15367-201ENSMUST00000122398 1016 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm13793-201ENSMUST00000124214 438 ntTSL 2 BASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm24780-201ENSMUST00000157635 143 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm29105-201ENSMUST00000187256 450 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm20946-201ENSMUST00000212367 461 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm18585-201ENSMUST00000215197 556 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr1176-201ENSMUST00000057439 949 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr746-201ENSMUST00000080616 945 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Gm38286-201ENSMUST00000195128 3105 ntBASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 Zfp990-201ENSMUST00000105741 3044 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
Ccdc88bQ4QRL3 AC132237.1-201ENSMUST00000220950 4475 ntBASIC5.5□□□□□ -1.53
Ccdc88bQ4QRL3 Skint6-202ENSMUST00000171224 3723 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr1471-205ENSMUST00000217482 1545 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
Ccdc88bQ4QRL3 Gm16070-202ENSMUST00000149914 2146 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
Ccdc88bQ4QRL3 Gm15647-201ENSMUST00000160178 691 ntTSL 3 BASIC5.5□□□□□ -1.53
Ccdc88bQ4QRL3 Gm27893-201ENSMUST00000184408 194 ntBASIC5.5□□□□□ -1.53
Ccdc88bQ4QRL3 Gm29218-205ENSMUST00000190846 615 ntBASIC5.5□□□□□ -1.53
Ccdc88bQ4QRL3 n-R5s86-201ENSMUST00000083215 119 ntBASIC5.5□□□□□ -1.53
Ccdc88bQ4QRL3 Ifi213-202ENSMUST00000150649 2748 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
Ccdc88bQ4QRL3 Stag2-201ENSMUST00000069619 5825 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
Ccdc88bQ4QRL3 Vps13d-202ENSMUST00000036579 15849 ntAPPRIS P2 TSL 5 BASIC5.5□□□□□ -1.53
Ccdc88bQ4QRL3 Fbxw28-201ENSMUST00000112039 1497 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Gm336-201ENSMUST00000186376 1480 ntBASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Gm15493-201ENSMUST00000119461 528 ntBASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Gm14389-201ENSMUST00000140453 241 ntBASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Gm23592-201ENSMUST00000157859 117 ntBASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Gm20672-201ENSMUST00000176605 261 ntBASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Gm26871-205ENSMUST00000181926 742 ntTSL 3 BASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Gm19726-201ENSMUST00000205008 240 ntBASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 C230072F16Rik-203ENSMUST00000220322 1136 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Gm18363-201ENSMUST00000221671 730 ntBASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 AC118639.1-204ENSMUST00000226401 694 ntBASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Ssxa1-201ENSMUST00000072593 433 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Gm26129-201ENSMUST00000082719 107 ntBASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr215-201ENSMUST00000061723 4112 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Gm37672-201ENSMUST00000192682 4014 ntBASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Gm38069-201ENSMUST00000195360 2144 ntBASIC5.49□□□□□ -1.53
Ccdc88bQ4QRL3 Cngb3-201ENSMUST00000102999 4708 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 2410012E07Rik-201ENSMUST00000190896 1357 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 1700008H02Rik-201ENSMUST00000201220 1684 ntBASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 Trav16n-201ENSMUST00000103633 353 ntAPPRIS ALT2 BASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 Gm26215-201ENSMUST00000158584 139 ntBASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 Mir6413-201ENSMUST00000184049 108 ntBASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 Gm21718-202ENSMUST00000186974 817 ntTSL 5 BASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr512-202ENSMUST00000209620 1056 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 Gm45400-201ENSMUST00000211603 653 ntBASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 Gm9845-201ENSMUST00000056409 598 ntBASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr512-201ENSMUST00000074730 1056 ntBASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 Gm38269-201ENSMUST00000194549 3298 ntBASIC5.48□□□□□ -1.53
Ccdc88bQ4QRL3 Gm42479-201ENSMUST00000198654 1356 ntBASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr1023-202ENSMUST00000213441 4740 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Elavl4-202ENSMUST00000102723 4024 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Chst9-201ENSMUST00000053017 1620 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Vmn1r185-212ENSMUST00000228633 5385 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Nlrp9a-202ENSMUST00000108387 3336 ntAPPRIS P4 TSL 1 (best) BASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Gm32693-201ENSMUST00000196538 2402 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
Retrieved 100 of 76,532 protein–RNA pairs in 86 ms