Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm23759-201ENSMUST00000158351 268 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm15562-201ENSMUST00000161397 426 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm17366-201ENSMUST00000167629 187 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm5168-202ENSMUST00000168002 636 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
Hoxd3P09027 Zfp456-202ENSMUST00000172266 679 ntTSL 3 BASIC4.83□□□□□ -1.64
Hoxd3P09027 Scarletltr-201ENSMUST00000176950 305 ntTSL 5 BASIC4.83□□□□□ -1.64
Hoxd3P09027 D630011A20Rik-201ENSMUST00000180858 500 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm27167-201ENSMUST00000183752 511 ntTSL 3 BASIC4.83□□□□□ -1.64
Hoxd3P09027 Mir7072-201ENSMUST00000184542 60 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm29509-201ENSMUST00000185716 321 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm44977-201ENSMUST00000205283 420 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm45196-201ENSMUST00000206751 825 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm18467-201ENSMUST00000208805 434 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 4930435C17Rik-202ENSMUST00000210759 974 ntTSL 5 BASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm9269-201ENSMUST00000221661 578 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Elk3-205ENSMUST00000223340 750 ntTSL 5 BASIC4.83□□□□□ -1.64
Hoxd3P09027 AC165138.1-201ENSMUST00000226984 270 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Uqcrh-ps1-201ENSMUST00000038391 270 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm25133-201ENSMUST00000082647 130 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm35755-201ENSMUST00000222392 2077 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Olfr1338-203ENSMUST00000216559 2829 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
Hoxd3P09027 Slc24a2-204ENSMUST00000107158 10499 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
Hoxd3P09027 Gm38067-201ENSMUST00000192346 1911 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Olfr1353-203ENSMUST00000205193 1924 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
Hoxd3P09027 Ccdc146-202ENSMUST00000115245 3389 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
Hoxd3P09027 Pou2f1-205ENSMUST00000111427 13050 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
Hoxd3P09027 Pbrm1-202ENSMUST00000022474 4843 ntTSL 5 BASIC4.83□□□□□ -1.64
Hoxd3P09027 Prom1-205ENSMUST00000165909 4089 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
Hoxd3P09027 Emcn-202ENSMUST00000122064 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
Hoxd3P09027 Olfr1493-ps1-202ENSMUST00000208667 1828 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
Hoxd3P09027 Tlr11-202ENSMUST00000185091 3207 ntAPPRIS P2 TSL 2 BASIC4.83□□□□□ -1.64
Hoxd3P09027 AC122769.3-201ENSMUST00000227739 3245 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Lmbrd2-201ENSMUST00000090380 3210 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
Hoxd3P09027 4921534A09Rik-201ENSMUST00000213976 2495 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Pde1a-202ENSMUST00000102651 1673 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
Hoxd3P09027 Pde1a-201ENSMUST00000090756 1661 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
Hoxd3P09027 Ap5m1-208ENSMUST00000228238 3514 ntBASIC4.83□□□□□ -1.64
Hoxd3P09027 Olfr741-202ENSMUST00000205518 3406 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Olfr947-ps1-202ENSMUST00000214936 2168 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Zfp974-201ENSMUST00000098639 5158 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm13078-201ENSMUST00000078695 2106 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm43281-201ENSMUST00000202522 2704 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Il2ra-201ENSMUST00000028111 4412 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Mug4-ps-201ENSMUST00000203118 3578 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Clec4a2-202ENSMUST00000041779 2481 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Vmn1r27-202ENSMUST00000226666 2969 ntAPPRIS ALT2 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gabra6-201ENSMUST00000020703 2436 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 C87977-204ENSMUST00000105757 1885 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Itih4-204ENSMUST00000168782 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm37192-201ENSMUST00000194479 1348 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Mir99ahg-214ENSMUST00000183333 3422 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Hsp90aa1-201ENSMUST00000021698 2852 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Mir99ahg-201ENSMUST00000068704 2858 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Tom1l1-204ENSMUST00000107869 1826 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm23422-201ENSMUST00000102000 107 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Igkv13-85-201ENSMUST00000114212 347 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm13400-201ENSMUST00000117436 380 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm13114-201ENSMUST00000117605 106 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm12156-201ENSMUST00000119188 554 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm13677-201ENSMUST00000120739 595 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm11679-201ENSMUST00000121830 779 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm13028-201ENSMUST00000128563 277 ntTSL 3 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm24687-201ENSMUST00000157758 241 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm24733-201ENSMUST00000158863 253 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm3488-201ENSMUST00000178220 519 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm3317-201ENSMUST00000179659 519 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm29352-201ENSMUST00000188054 544 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm8241-201ENSMUST00000189286 816 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 2810025M15Rik-203ENSMUST00000189791 251 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm7837-201ENSMUST00000190873 412 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm8009-201ENSMUST00000191672 436 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm37430-201ENSMUST00000193039 196 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm34882-201ENSMUST00000193245 974 ntTSL 5 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm31887-201ENSMUST00000197661 501 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm36546-201ENSMUST00000206372 230 ntTSL 5 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm45405-201ENSMUST00000211544 609 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 CT954323.1-201ENSMUST00000222774 229 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm7042-201ENSMUST00000223027 384 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 AC154840.1-201ENSMUST00000225216 408 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm4987-201ENSMUST00000078326 408 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Vmn1r35-205ENSMUST00000227961 1789 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Atp13a5-203ENSMUST00000143373 3789 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Neb-201ENSMUST00000028320 10298 ntTSL 5 BASIC4.82□□□□□ -1.64
Hoxd3P09027 B3gnt5-203ENSMUST00000121344 4175 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Vmn1r6-206ENSMUST00000227847 8073 ntAPPRIS P2 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Adgre1-201ENSMUST00000004850 3124 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Prrc2c-201ENSMUST00000028016 8815 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Platr21-201ENSMUST00000126339 3511 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Prr14l-201ENSMUST00000120129 9959 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
Hoxd3P09027 Gm43682-201ENSMUST00000202150 2090 ntBASIC4.82□□□□□ -1.64
Hoxd3P09027 Platr25-201ENSMUST00000143260 2509 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Ttk-201ENSMUST00000070326 2871 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
Hoxd3P09027 Olfr671-202ENSMUST00000210963 3157 ntTSL 5 BASIC4.81□□□□□ -1.64
Hoxd3P09027 Cd36-202ENSMUST00000165232 2708 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
Hoxd3P09027 Gm37076-201ENSMUST00000192033 2294 ntBASIC4.81□□□□□ -1.64
Hoxd3P09027 Olfr1173-201ENSMUST00000099830 2268 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
Hoxd3P09027 Nxf7-202ENSMUST00000113163 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
Hoxd3P09027 Usp47-202ENSMUST00000210309 5816 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
Hoxd3P09027 Gm35028-201ENSMUST00000215400 2587 ntTSL 5 BASIC4.81□□□□□ -1.64
Hoxd3P09027 Obox4-ps12-201ENSMUST00000180084 1362 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 76,532 protein–RNA pairs in 83.5 ms