Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm17954-201ENSMUST00000195893 607 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm43744-201ENSMUST00000196387 688 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm35077-201ENSMUST00000204999 275 ntTSL 3 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gnb1-ps3-201ENSMUST00000212191 950 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 AC152979.3-201ENSMUST00000217720 479 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 AC153938.2-201ENSMUST00000218388 580 ntTSL 5 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm33308-202ENSMUST00000218566 652 ntTSL 3 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm17849-201ENSMUST00000219788 853 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm7252-201ENSMUST00000223284 456 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 AC156559.1-201ENSMUST00000224158 222 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 AC163743.1-201ENSMUST00000224309 270 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Gm4987-201ENSMUST00000078326 408 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Olfr1490-201ENSMUST00000080162 951 ntAPPRIS P2 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Tmprss11f-201ENSMUST00000116553 3605 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Pigb-201ENSMUST00000093819 2866 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
Rnf40Q3U319 AC126439.1-201ENSMUST00000226772 2104 ntBASIC6.41□□□□□ -1.38
Rnf40Q3U319 Lrp2bp-203ENSMUST00000110381 3421 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Fap-208ENSMUST00000174234 2211 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
Rnf40Q3U319 Ift80-208ENSMUST00000169064 4064 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Olfr1062-203ENSMUST00000217481 3726 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Vmn2r46-201ENSMUST00000171523 2430 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Olfr771-202ENSMUST00000214271 2098 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Iqca-207ENSMUST00000212394 2574 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Cdc27-201ENSMUST00000093923 5425 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm21985-201ENSMUST00000141047 4532 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Olfr739-202ENSMUST00000216949 3581 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm14326-204ENSMUST00000178829 1665 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Fchsd2-202ENSMUST00000098250 4316 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm15402-201ENSMUST00000114051 670 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Vma21-ps-201ENSMUST00000114578 306 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm12468-201ENSMUST00000116189 404 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm14070-201ENSMUST00000120773 428 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm23209-201ENSMUST00000158667 110 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Mir1930-201ENSMUST00000158799 84 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Ptpn4-204ENSMUST00000163621 431 ntTSL 3 BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm28783-201ENSMUST00000188872 359 ntTSL 5 BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm38098-201ENSMUST00000194115 241 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Igkv4-65-201ENSMUST00000196986 358 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm43561-201ENSMUST00000199866 448 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm43849-201ENSMUST00000201086 215 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm2059-201ENSMUST00000212025 287 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm7943-201ENSMUST00000212078 1034 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm45815-201ENSMUST00000220241 146 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Tbc1d7-204ENSMUST00000220787 892 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
Rnf40Q3U319 AC132324.1-201ENSMUST00000221855 584 ntTSL 5 BASIC6.4□□□□□ -1.38
Rnf40Q3U319 Gm11360-201ENSMUST00000221898 262 ntBASIC6.4□□□□□ -1.38
Rnf40Q3U319 Hc-201ENSMUST00000028233 5445 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
Rnf40Q3U319 G530011O06Rik-201ENSMUST00000154810 2380 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
Rnf40Q3U319 Olfr133-204ENSMUST00000215549 2944 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
Rnf40Q3U319 C4bp-201ENSMUST00000027657 3045 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
Rnf40Q3U319 Lair1-203ENSMUST00000086401 2496 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
Rnf40Q3U319 Epha4-204ENSMUST00000188797 3612 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
Rnf40Q3U319 Dpp10-202ENSMUST00000112606 15297 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.39
Rnf40Q3U319 Nlgn1-201ENSMUST00000075054 4359 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.39
Rnf40Q3U319 Cr2-202ENSMUST00000082321 6207 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
Rnf40Q3U319 Trim12a-201ENSMUST00000070943 1531 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
Rnf40Q3U319 Kat7-202ENSMUST00000092766 3414 ntTSL 5 BASIC6.4□□□□□ -1.39
Rnf40Q3U319 Kif20b-203ENSMUST00000223907 5423 ntAPPRIS ALT2 BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Ifi44-201ENSMUST00000029671 2910 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Cd226-201ENSMUST00000037142 2357 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Ceacam2-202ENSMUST00000064862 3087 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm5930-201ENSMUST00000111863 1746 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
Rnf40Q3U319 AC122769.3-201ENSMUST00000227739 3245 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 A230108P19Rik-201ENSMUST00000151782 2500 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 AC107645.1-201ENSMUST00000228660 1810 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm17203-201ENSMUST00000164379 4017 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Aftph-205ENSMUST00000146722 3763 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Igkv4-59-201ENSMUST00000103354 368 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm12509-201ENSMUST00000118033 609 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm14566-201ENSMUST00000118915 321 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm11693-201ENSMUST00000119625 565 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm15807-201ENSMUST00000119880 1128 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm5384-201ENSMUST00000120313 463 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm14591-201ENSMUST00000120407 518 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm7670-201ENSMUST00000121272 641 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm15362-201ENSMUST00000121459 388 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm14768-201ENSMUST00000122126 678 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm22145-201ENSMUST00000157396 148 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm23759-201ENSMUST00000158351 268 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm22533-201ENSMUST00000158821 274 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Ly6k-202ENSMUST00000168815 612 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm21738-201ENSMUST00000177817 681 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm24713-201ENSMUST00000178850 107 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm25448-201ENSMUST00000180065 107 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm27014-201ENSMUST00000182658 937 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gtpbp4-ps3-201ENSMUST00000184093 136 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm28527-201ENSMUST00000185210 297 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 1700025B11Rik-201ENSMUST00000190233 553 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Snurf-201ENSMUST00000194059 216 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm43798-201ENSMUST00000202056 394 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Rpl7a-ps14-201ENSMUST00000205097 790 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm19126-201ENSMUST00000207896 509 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm35998-201ENSMUST00000212862 838 ntTSL 5 BASIC6.39□□□□□ -1.39
Rnf40Q3U319 4930471E15Rik-201ENSMUST00000221147 626 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm6474-201ENSMUST00000223250 699 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 AC156802.1-201ENSMUST00000223623 579 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 AC154487.1-201ENSMUST00000224649 226 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Wfdc15a-201ENSMUST00000063251 488 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Vps50-202ENSMUST00000164052 4824 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Sgip1-205ENSMUST00000106882 6061 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
Retrieved 100 of 76,532 protein–RNA pairs in 94.9 ms