Protein–RNA interactions for Protein: Q9QZS2

Rnf4, E3 ubiquitin-protein ligase RNF4, mousemouse

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf4Q9QZS2 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rnf4Q9QZS2 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Mir8112-201ENSMUST00000184382 131 ntBASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Gm9847-201ENSMUST00000052528 599 ntBASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Rnf4Q9QZS2 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rnf4Q9QZS2 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rnf4Q9QZS2 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Rnf4Q9QZS2 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Rnf4Q9QZS2 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.58■□□□□ 0.41
Rnf4Q9QZS2 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rnf4Q9QZS2 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Rnf4Q9QZS2 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Rnf4Q9QZS2 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rnf4Q9QZS2 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.58■□□□□ 0.4
Rnf4Q9QZS2 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC17.58■□□□□ 0.4
Rnf4Q9QZS2 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rnf4Q9QZS2 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Rnf4Q9QZS2 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rnf4Q9QZS2 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Rnf4Q9QZS2 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rnf4Q9QZS2 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rnf4Q9QZS2 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Rnf4Q9QZS2 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms