Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim54Q9ERP3 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Gm16061-201ENSMUST00000122167 857 ntBASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim54Q9ERP3 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim54Q9ERP3 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
Trim54Q9ERP3 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim54Q9ERP3 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim54Q9ERP3 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim54Q9ERP3 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim54Q9ERP3 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim54Q9ERP3 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.83■□□□□ 0.6
Trim54Q9ERP3 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim54Q9ERP3 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.83■□□□□ 0.6
Trim54Q9ERP3 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim54Q9ERP3 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Trim54Q9ERP3 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18.83■□□□□ 0.6
Trim54Q9ERP3 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
Trim54Q9ERP3 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim54Q9ERP3 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim54Q9ERP3 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim54Q9ERP3 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trim54Q9ERP3 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Gm7370-201ENSMUST00000219471 767 ntBASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Trim54Q9ERP3 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms