Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Vps28Q9D1C8 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Gm9694-201ENSMUST00000193347 1189 ntBASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Gm4974-201ENSMUST00000209974 875 ntBASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Gm5898-201ENSMUST00000121016 2071 ntBASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps28Q9D1C8 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps28Q9D1C8 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps28Q9D1C8 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Vps28Q9D1C8 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps28Q9D1C8 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps28Q9D1C8 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps28Q9D1C8 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps28Q9D1C8 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps28Q9D1C8 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps28Q9D1C8 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps28Q9D1C8 Mir7071-201ENSMUST00000184847 69 ntBASIC17.83■□□□□ 0.44
Vps28Q9D1C8 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps28Q9D1C8 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps28Q9D1C8 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps28Q9D1C8 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps28Q9D1C8 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps28Q9D1C8 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps28Q9D1C8 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Odf3b-204ENSMUST00000227834 930 ntBASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Vps28Q9D1C8 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Gm21814-202ENSMUST00000203277 873 ntBASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Otx2os1-204ENSMUST00000227221 751 ntBASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Idnk-204ENSMUST00000226010 1898 ntBASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Vps28Q9D1C8 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Gm15565-201ENSMUST00000118890 427 ntBASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Gm12085-201ENSMUST00000119263 940 ntBASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms