Protein–RNA interactions for Protein: Q99J62

Rfc4, Replication factor C subunit 4, mousemouse

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfc4Q99J62 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfc4Q99J62 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Rfc4Q99J62 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfc4Q99J62 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.06■□□□□ 0.8
Rfc4Q99J62 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfc4Q99J62 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfc4Q99J62 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfc4Q99J62 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Gm7153-201ENSMUST00000117092 455 ntBASIC20.05■□□□□ 0.8
Rfc4Q99J62 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfc4Q99J62 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.05■□□□□ 0.8
Rfc4Q99J62 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfc4Q99J62 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfc4Q99J62 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Rfc4Q99J62 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Rfc4Q99J62 Gm26039-201ENSMUST00000158152 144 ntBASIC20.04■□□□□ 0.8
Rfc4Q99J62 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Rfc4Q99J62 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfc4Q99J62 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
Rfc4Q99J62 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfc4Q99J62 Gm35558-201ENSMUST00000222675 2219 ntBASIC20.04■□□□□ 0.8
Rfc4Q99J62 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Rfc4Q99J62 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.04■□□□□ 0.8
Rfc4Q99J62 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfc4Q99J62 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.04■□□□□ 0.8
Rfc4Q99J62 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfc4Q99J62 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
Rfc4Q99J62 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfc4Q99J62 Gm11950-201ENSMUST00000121615 838 ntBASIC20.03■□□□□ 0.8
Rfc4Q99J62 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC20.03■□□□□ 0.8
Rfc4Q99J62 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfc4Q99J62 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfc4Q99J62 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Rfc4Q99J62 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfc4Q99J62 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Rfc4Q99J62 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfc4Q99J62 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfc4Q99J62 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfc4Q99J62 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfc4Q99J62 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
Rfc4Q99J62 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfc4Q99J62 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC20.02■□□□□ 0.8
Rfc4Q99J62 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfc4Q99J62 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Rfc4Q99J62 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfc4Q99J62 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfc4Q99J62 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rfc4Q99J62 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Rfc4Q99J62 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC20.02■□□□□ 0.79
Rfc4Q99J62 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Rfc4Q99J62 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Rfc4Q99J62 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Rfc4Q99J62 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
Rfc4Q99J62 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Rfc4Q99J62 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Rfc4Q99J62 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Rfc4Q99J62 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Rfc4Q99J62 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfc4Q99J62 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfc4Q99J62 Fst-202ENSMUST00000223640 2612 ntBASIC20.01■□□□□ 0.79
Rfc4Q99J62 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfc4Q99J62 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Rfc4Q99J62 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfc4Q99J62 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC20.01■□□□□ 0.79
Rfc4Q99J62 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfc4Q99J62 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Rfc4Q99J62 Umpk-ps-201ENSMUST00000211897 827 ntBASIC20.01■□□□□ 0.79
Rfc4Q99J62 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfc4Q99J62 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Rfc4Q99J62 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfc4Q99J62 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rfc4Q99J62 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.01■□□□□ 0.79
Rfc4Q99J62 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Rfc4Q99J62 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Rfc4Q99J62 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Rfc4Q99J62 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Rfc4Q99J62 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Rfc4Q99J62 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Rfc4Q99J62 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC20■□□□□ 0.79
Rfc4Q99J62 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC20■□□□□ 0.79
Rfc4Q99J62 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Rfc4Q99J62 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms