Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Rarb-207ENSMUST00000225921 2756 ntBASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpp40Q8R1F9 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Gm27463-201ENSMUST00000183569 57 ntBASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rpp40Q8R1F9 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Rpp40Q8R1F9 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpp40Q8R1F9 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Rpp40Q8R1F9 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.65■□□□□ 0.58
Rpp40Q8R1F9 Gm37025-201ENSMUST00000195159 829 ntBASIC18.65■□□□□ 0.58
Rpp40Q8R1F9 Gm7791-201ENSMUST00000219066 539 ntBASIC18.65■□□□□ 0.58
Rpp40Q8R1F9 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpp40Q8R1F9 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpp40Q8R1F9 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.65■□□□□ 0.58
Rpp40Q8R1F9 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpp40Q8R1F9 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpp40Q8R1F9 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Gm6433-201ENSMUST00000118634 875 ntBASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Gm7889-201ENSMUST00000185591 958 ntBASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Gm9731-201ENSMUST00000209480 747 ntBASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Gm9987-201ENSMUST00000069768 567 ntBASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC18.63■□□□□ 0.57
Rpp40Q8R1F9 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms