Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Brf1Q8CFK2 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Brf1Q8CFK2 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Brf1Q8CFK2 Gm13181-201ENSMUST00000120117 1069 ntBASIC21.02■□□□□ 0.96
Brf1Q8CFK2 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Brf1Q8CFK2 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Brf1Q8CFK2 Gm37519-201ENSMUST00000191687 2210 ntBASIC21.02■□□□□ 0.96
Brf1Q8CFK2 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Brf1Q8CFK2 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC21.02■□□□□ 0.96
Brf1Q8CFK2 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
Brf1Q8CFK2 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Brf1Q8CFK2 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Brf1Q8CFK2 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Brf1Q8CFK2 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Gm715-201ENSMUST00000117865 831 ntBASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Gm16042-201ENSMUST00000204813 1247 ntBASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Arhgef33-211ENSMUST00000225658 473 ntBASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
Brf1Q8CFK2 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Brf1Q8CFK2 Gm19721-201ENSMUST00000195284 1764 ntBASIC21■□□□□ 0.95
Brf1Q8CFK2 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC21■□□□□ 0.95
Brf1Q8CFK2 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC21■□□□□ 0.95
Brf1Q8CFK2 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC21■□□□□ 0.95
Brf1Q8CFK2 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Brf1Q8CFK2 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Brf1Q8CFK2 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Brf1Q8CFK2 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC21■□□□□ 0.95
Brf1Q8CFK2 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Brf1Q8CFK2 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Brf1Q8CFK2 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Brf1Q8CFK2 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Brf1Q8CFK2 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Brf1Q8CFK2 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Brf1Q8CFK2 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC21■□□□□ 0.95
Brf1Q8CFK2 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC21■□□□□ 0.95
Brf1Q8CFK2 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Brf1Q8CFK2 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Brf1Q8CFK2 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Brf1Q8CFK2 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Brf1Q8CFK2 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Brf1Q8CFK2 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Brf1Q8CFK2 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Brf1Q8CFK2 Gm24841-201ENSMUST00000158676 357 ntBASIC20.99■□□□□ 0.95
Brf1Q8CFK2 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC20.99■□□□□ 0.95
Brf1Q8CFK2 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Brf1Q8CFK2 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Brf1Q8CFK2 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Brf1Q8CFK2 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Brf1Q8CFK2 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Gm12085-201ENSMUST00000119263 940 ntBASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Brf1Q8CFK2 AC122335.2-201ENSMUST00000213901 6181 ntBASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Brf1Q8CFK2 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Brf1Q8CFK2 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Brf1Q8CFK2 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Brf1Q8CFK2 Gm43808-201ENSMUST00000202534 2065 ntBASIC20.97■□□□□ 0.95
Brf1Q8CFK2 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Brf1Q8CFK2 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Brf1Q8CFK2 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Brf1Q8CFK2 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Brf1Q8CFK2 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Brf1Q8CFK2 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Brf1Q8CFK2 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Brf1Q8CFK2 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Brf1Q8CFK2 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms