Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc40Q8BI79 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.14■□□□□ 0.5
Ccdc40Q8BI79 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ccdc40Q8BI79 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Ccdc40Q8BI79 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Ccdc40Q8BI79 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ccdc40Q8BI79 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
Ccdc40Q8BI79 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ccdc40Q8BI79 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Ccdc40Q8BI79 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Gm8969-201ENSMUST00000199694 526 ntBASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Ccdc40Q8BI79 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Dio3-201ENSMUST00000097228 1449 ntBASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Gm9867-201ENSMUST00000192212 2647 ntBASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Ccdc40Q8BI79 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Gm10418-201ENSMUST00000100943 576 ntBASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc40Q8BI79 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc40Q8BI79 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.11■□□□□ 0.49
Ccdc40Q8BI79 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Ccdc40Q8BI79 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC18.11■□□□□ 0.49
Ccdc40Q8BI79 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC18.11■□□□□ 0.49
Ccdc40Q8BI79 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc40Q8BI79 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc40Q8BI79 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc40Q8BI79 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc40Q8BI79 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc40Q8BI79 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms