Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Snrnp40Q6PE01 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Snrnp40Q6PE01 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Snrnp40Q6PE01 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Snrnp40Q6PE01 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Snrnp40Q6PE01 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Snrnp40Q6PE01 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Snrnp40Q6PE01 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Snrnp40Q6PE01 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Snrnp40Q6PE01 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Gm34391-201ENSMUST00000203706 907 ntBASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Snrnp40Q6PE01 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Olfr129-201ENSMUST00000122318 993 ntBASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 AC122351.1-201ENSMUST00000220467 126 ntBASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Snrnp40Q6PE01 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Snrnp40Q6PE01 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Ighv6-1-201ENSMUST00000193612 343 ntBASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Gm43514-201ENSMUST00000198852 424 ntBASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 AC164629.2-201ENSMUST00000217916 270 ntBASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Birc2-201ENSMUST00000054878 378 ntBASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Snrnp40Q6PE01 Gm5784-201ENSMUST00000179344 2478 ntBASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Gm28659-201ENSMUST00000188013 759 ntBASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Gm6443-201ENSMUST00000203599 874 ntBASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms