Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Hmgb4Q6P8W9 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb4Q6P8W9 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb4Q6P8W9 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb4Q6P8W9 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Hmgb4Q6P8W9 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Fst-202ENSMUST00000223640 2612 ntBASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb4Q6P8W9 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb4Q6P8W9 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Hmgb4Q6P8W9 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb4Q6P8W9 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb4Q6P8W9 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb4Q6P8W9 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb4Q6P8W9 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb4Q6P8W9 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.2■□□□□ 0.5
Hmgb4Q6P8W9 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC18.2■□□□□ 0.5
Hmgb4Q6P8W9 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb4Q6P8W9 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Hmgb4Q6P8W9 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.2■□□□□ 0.5
Hmgb4Q6P8W9 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.19■□□□□ 0.5
Hmgb4Q6P8W9 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb4Q6P8W9 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms