Protein–RNA interactions for Protein: Q6NSQ5

Sp140, Sp140 nuclear body protein, mousemouse

Predictions only

Length 534 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sp140Q6NSQ5 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Gm11643-201ENSMUST00000119578 864 ntBASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Gm6576-201ENSMUST00000169678 883 ntBASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Gm37856-201ENSMUST00000191634 999 ntBASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sp140Q6NSQ5 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sp140Q6NSQ5 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Gm42545-201ENSMUST00000202755 922 ntBASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sp140Q6NSQ5 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Gm18025-201ENSMUST00000221733 862 ntBASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sp140Q6NSQ5 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Trmt13-210ENSMUST00000198454 880 ntBASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 AC166341.7-201ENSMUST00000221698 126 ntBASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sp140Q6NSQ5 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Sp140Q6NSQ5 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.42
Sp140Q6NSQ5 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sp140Q6NSQ5 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sp140Q6NSQ5 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sp140Q6NSQ5 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Sp140Q6NSQ5 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sp140Q6NSQ5 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Sp140Q6NSQ5 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms