Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Gm11643-201ENSMUST00000119578 864 ntBASIC20.5■□□□□ 0.87
Limch1Q3UH68 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.5■□□□□ 0.87
Limch1Q3UH68 AC130671.1-201ENSMUST00000227384 1237 ntBASIC20.5■□□□□ 0.87
Limch1Q3UH68 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC20.49■□□□□ 0.87
Limch1Q3UH68 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Limch1Q3UH68 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Limch1Q3UH68 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Limch1Q3UH68 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC20.48■□□□□ 0.87
Limch1Q3UH68 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Limch1Q3UH68 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Limch1Q3UH68 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Limch1Q3UH68 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Limch1Q3UH68 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Limch1Q3UH68 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Limch1Q3UH68 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC20.47■□□□□ 0.87
Limch1Q3UH68 Mir5122-201ENSMUST00000175004 89 ntBASIC20.47■□□□□ 0.87
Limch1Q3UH68 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Limch1Q3UH68 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Limch1Q3UH68 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Limch1Q3UH68 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Limch1Q3UH68 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Gm6598-201ENSMUST00000202719 2615 ntBASIC20.46■□□□□ 0.87
Limch1Q3UH68 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Mir8112-201ENSMUST00000184382 131 ntBASIC20.46■□□□□ 0.87
Limch1Q3UH68 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Limch1Q3UH68 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Limch1Q3UH68 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Gm10138-203ENSMUST00000206952 366 ntBASIC20.45■□□□□ 0.86
Limch1Q3UH68 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Limch1Q3UH68 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms