Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.44■□□□□ 0.54
Shmt1P50431 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Shmt1P50431 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Shmt1P50431 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Shmt1P50431 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18.43■□□□□ 0.54
Shmt1P50431 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.43■□□□□ 0.54
Shmt1P50431 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Shmt1P50431 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
Shmt1P50431 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.43■□□□□ 0.54
Shmt1P50431 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Shmt1P50431 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Shmt1P50431 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Shmt1P50431 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.43■□□□□ 0.54
Shmt1P50431 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Shmt1P50431 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Shmt1P50431 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.43■□□□□ 0.54
Shmt1P50431 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Shmt1P50431 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 Gm7638-201ENSMUST00000121348 967 ntBASIC18.42■□□□□ 0.54
Shmt1P50431 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.42■□□□□ 0.54
Shmt1P50431 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.42■□□□□ 0.54
Shmt1P50431 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 AC130671.1-201ENSMUST00000227384 1237 ntBASIC18.42■□□□□ 0.54
Shmt1P50431 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Shmt1P50431 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Shmt1P50431 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Shmt1P50431 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Shmt1P50431 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Shmt1P50431 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Shmt1P50431 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.4■□□□□ 0.54
Shmt1P50431 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Shmt1P50431 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Shmt1P50431 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Shmt1P50431 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Shmt1P50431 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Shmt1P50431 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Shmt1P50431 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Shmt1P50431 Gm6433-201ENSMUST00000118634 875 ntBASIC18.4■□□□□ 0.54
Shmt1P50431 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.4■□□□□ 0.54
Shmt1P50431 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Shmt1P50431 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.4■□□□□ 0.54
Shmt1P50431 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Shmt1P50431 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC18.4■□□□□ 0.54
Shmt1P50431 AC121577.1-201ENSMUST00000227302 707 ntBASIC18.4■□□□□ 0.54
Shmt1P50431 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Shmt1P50431 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Shmt1P50431 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Shmt1P50431 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.4■□□□□ 0.54
Shmt1P50431 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Shmt1P50431 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Shmt1P50431 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.39■□□□□ 0.54
Shmt1P50431 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC18.39■□□□□ 0.54
Shmt1P50431 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Shmt1P50431 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Shmt1P50431 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Shmt1P50431 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Shmt1P50431 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.39■□□□□ 0.53
Shmt1P50431 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
Shmt1P50431 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Shmt1P50431 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.39■□□□□ 0.53
Shmt1P50431 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.39■□□□□ 0.53
Shmt1P50431 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.39■□□□□ 0.53
Shmt1P50431 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.39■□□□□ 0.53
Shmt1P50431 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Shmt1P50431 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.39■□□□□ 0.53
Shmt1P50431 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Shmt1P50431 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Shmt1P50431 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Shmt1P50431 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
Shmt1P50431 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.38■□□□□ 0.53
Shmt1P50431 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.38■□□□□ 0.53
Shmt1P50431 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Shmt1P50431 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Shmt1P50431 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.38■□□□□ 0.53
Shmt1P50431 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Shmt1P50431 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Shmt1P50431 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC18.38■□□□□ 0.53
Shmt1P50431 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Shmt1P50431 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Shmt1P50431 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms