Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cdx1P18111 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Cdx1P18111 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Cdx1P18111 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Cdx1P18111 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC14.06□□□□□ -0.16
Cdx1P18111 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Cdx1P18111 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC14.06□□□□□ -0.16
Cdx1P18111 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Cdx1P18111 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cdx1P18111 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Cdx1P18111 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
Cdx1P18111 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
Cdx1P18111 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Gm7514-201ENSMUST00000209475 934 ntBASIC14.05□□□□□ -0.16
Cdx1P18111 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
Cdx1P18111 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Cdx1P18111 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Cdx1P18111 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cdx1P18111 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC14.04□□□□□ -0.16
Cdx1P18111 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Gm12669-201ENSMUST00000122162 1009 ntBASIC14.04□□□□□ -0.16
Cdx1P18111 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Cdx1P18111 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC14.04□□□□□ -0.16
Cdx1P18111 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Cdx1P18111 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cdx1P18111 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Cdx1P18111 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx1P18111 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC14.03□□□□□ -0.16
Cdx1P18111 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx1P18111 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Cdx1P18111 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx1P18111 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC14.03□□□□□ -0.16
Cdx1P18111 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx1P18111 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx1P18111 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Cdx1P18111 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx1P18111 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx1P18111 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC14.03□□□□□ -0.16
Cdx1P18111 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC14.03□□□□□ -0.16
Cdx1P18111 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx1P18111 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx1P18111 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx1P18111 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cdx1P18111 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC14.02□□□□□ -0.16
Cdx1P18111 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cdx1P18111 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC14.02□□□□□ -0.16
Cdx1P18111 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cdx1P18111 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cdx1P18111 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cdx1P18111 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cdx1P18111 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cdx1P18111 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cdx1P18111 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC14.02□□□□□ -0.16
Cdx1P18111 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Cdx1P18111 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx1P18111 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx1P18111 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC14.02□□□□□ -0.17
Cdx1P18111 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx1P18111 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx1P18111 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx1P18111 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms