Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm12895-201ENSMUST00000122214 226 ntBASIC20.41■□□□□ 0.86
Col1a1P11087 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col1a1P11087 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Col1a1P11087 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col1a1P11087 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col1a1P11087 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col1a1P11087 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.4■□□□□ 0.86
Col1a1P11087 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
Col1a1P11087 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC20.4■□□□□ 0.86
Col1a1P11087 Gm43347-201ENSMUST00000200226 580 ntBASIC20.4■□□□□ 0.86
Col1a1P11087 Gm5864-201ENSMUST00000202263 970 ntBASIC20.4■□□□□ 0.86
Col1a1P11087 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col1a1P11087 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col1a1P11087 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col1a1P11087 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col1a1P11087 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col1a1P11087 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col1a1P11087 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col1a1P11087 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col1a1P11087 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
Col1a1P11087 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col1a1P11087 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col1a1P11087 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Col1a1P11087 Gm5867-201ENSMUST00000063197 592 ntBASIC20.39■□□□□ 0.85
Col1a1P11087 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col1a1P11087 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC20.39■□□□□ 0.85
Col1a1P11087 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col1a1P11087 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC20.39■□□□□ 0.85
Col1a1P11087 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.39■□□□□ 0.85
Col1a1P11087 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col1a1P11087 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col1a1P11087 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col1a1P11087 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC20.38■□□□□ 0.85
Col1a1P11087 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC20.38■□□□□ 0.85
Col1a1P11087 AC125350.1-201ENSMUST00000225115 903 ntBASIC20.38■□□□□ 0.85
Col1a1P11087 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col1a1P11087 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC20.38■□□□□ 0.85
Col1a1P11087 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC20.38■□□□□ 0.85
Col1a1P11087 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col1a1P11087 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col1a1P11087 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Col1a1P11087 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col1a1P11087 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Col1a1P11087 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col1a1P11087 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC20.37■□□□□ 0.85
Col1a1P11087 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC20.37■□□□□ 0.85
Col1a1P11087 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Col1a1P11087 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Col1a1P11087 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC20.37■□□□□ 0.85
Col1a1P11087 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC20.37■□□□□ 0.85
Col1a1P11087 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC20.37■□□□□ 0.85
Col1a1P11087 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col1a1P11087 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col1a1P11087 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col1a1P11087 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col1a1P11087 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.36■□□□□ 0.85
Col1a1P11087 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col1a1P11087 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col1a1P11087 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC20.36■□□□□ 0.85
Col1a1P11087 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col1a1P11087 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col1a1P11087 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col1a1P11087 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col1a1P11087 Gm43272-201ENSMUST00000200599 1584 ntBASIC20.36■□□□□ 0.85
Col1a1P11087 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col1a1P11087 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC20.35■□□□□ 0.85
Col1a1P11087 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Gm35558-201ENSMUST00000222675 2219 ntBASIC20.35■□□□□ 0.85
Col1a1P11087 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC20.35■□□□□ 0.85
Col1a1P11087 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Col1a1P11087 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Col1a1P11087 Gm19721-201ENSMUST00000195284 1764 ntBASIC20.35■□□□□ 0.85
Col1a1P11087 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Fst-202ENSMUST00000223640 2612 ntBASIC20.35■□□□□ 0.85
Col1a1P11087 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col1a1P11087 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms