Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col5a1O88207 Fst-202ENSMUST00000223640 2612 ntBASIC15.74■□□□□ 0.11
Col5a1O88207 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC15.74■□□□□ 0.11
Col5a1O88207 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col5a1O88207 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
Col5a1O88207 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col5a1O88207 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC15.74■□□□□ 0.11
Col5a1O88207 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.74■□□□□ 0.11
Col5a1O88207 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col5a1O88207 Gm27459-201ENSMUST00000184860 107 ntBASIC15.74■□□□□ 0.11
Col5a1O88207 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Col5a1O88207 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Col5a1O88207 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col5a1O88207 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col5a1O88207 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col5a1O88207 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col5a1O88207 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC15.73■□□□□ 0.11
Col5a1O88207 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Col5a1O88207 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Gm5953-201ENSMUST00000220644 2616 ntBASIC15.73■□□□□ 0.11
Col5a1O88207 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Col5a1O88207 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Gm18733-201ENSMUST00000173950 856 ntBASIC15.73■□□□□ 0.11
Col5a1O88207 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Gm7213-201ENSMUST00000215977 950 ntBASIC15.73■□□□□ 0.11
Col5a1O88207 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col5a1O88207 Birc2-201ENSMUST00000054878 378 ntBASIC15.73■□□□□ 0.11
Col5a1O88207 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC15.73■□□□□ 0.11
Col5a1O88207 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col5a1O88207 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC15.72■□□□□ 0.11
Col5a1O88207 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col5a1O88207 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col5a1O88207 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Col5a1O88207 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col5a1O88207 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC15.72■□□□□ 0.11
Col5a1O88207 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col5a1O88207 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col5a1O88207 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col5a1O88207 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC15.72■□□□□ 0.11
Col5a1O88207 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Col5a1O88207 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col5a1O88207 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col5a1O88207 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Col5a1O88207 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col5a1O88207 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC15.71■□□□□ 0.11
Col5a1O88207 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC15.71■□□□□ 0.11
Col5a1O88207 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col5a1O88207 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC15.71■□□□□ 0.11
Col5a1O88207 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Col5a1O88207 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC15.71■□□□□ 0.11
Col5a1O88207 Gm27742-201ENSMUST00000184667 60 ntBASIC15.71■□□□□ 0.11
Col5a1O88207 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC15.71■□□□□ 0.11
Col5a1O88207 AC120002.2-201ENSMUST00000220205 773 ntBASIC15.71■□□□□ 0.11
Col5a1O88207 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col5a1O88207 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col5a1O88207 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Col5a1O88207 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC15.71■□□□□ 0.11
Col5a1O88207 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC15.71■□□□□ 0.11
Col5a1O88207 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC15.71■□□□□ 0.11
Col5a1O88207 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col5a1O88207 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col5a1O88207 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Col5a1O88207 Gm11355-201ENSMUST00000121120 306 ntBASIC15.71■□□□□ 0.1
Col5a1O88207 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col5a1O88207 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Col5a1O88207 Gm18206-201ENSMUST00000207027 926 ntBASIC15.71■□□□□ 0.1
Col5a1O88207 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Gm11860-201ENSMUST00000122346 1010 ntBASIC15.7■□□□□ 0.1
Col5a1O88207 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Col5a1O88207 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Gm6190-201ENSMUST00000220683 1374 ntBASIC15.7■□□□□ 0.1
Col5a1O88207 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col5a1O88207 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Col5a1O88207 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col5a1O88207 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms