Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Cbx4O55187 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.06■□□□□ 0.32
Cbx4O55187 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Gm20760-201ENSMUST00000179197 648 ntBASIC17.06■□□□□ 0.32
Cbx4O55187 Gm42545-201ENSMUST00000202755 922 ntBASIC17.06■□□□□ 0.32
Cbx4O55187 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Cbx4O55187 AC166341.7-201ENSMUST00000221698 126 ntBASIC17.06■□□□□ 0.32
Cbx4O55187 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cbx4O55187 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC17.06■□□□□ 0.32
Cbx4O55187 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cbx4O55187 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC17.05■□□□□ 0.32
Cbx4O55187 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC17.05■□□□□ 0.32
Cbx4O55187 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cbx4O55187 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cbx4O55187 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cbx4O55187 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cbx4O55187 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC17.05■□□□□ 0.32
Cbx4O55187 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Cbx4O55187 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Cbx4O55187 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cbx4O55187 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.05■□□□□ 0.32
Cbx4O55187 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Cbx4O55187 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cbx4O55187 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Cbx4O55187 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.05■□□□□ 0.32
Cbx4O55187 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC17.05■□□□□ 0.32
Cbx4O55187 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cbx4O55187 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
Cbx4O55187 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Cbx4O55187 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.04■□□□□ 0.32
Cbx4O55187 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC17.04■□□□□ 0.32
Cbx4O55187 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cbx4O55187 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cbx4O55187 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cbx4O55187 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC17.03■□□□□ 0.32
Cbx4O55187 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cbx4O55187 Gm5643-201ENSMUST00000117081 966 ntBASIC17.03■□□□□ 0.32
Cbx4O55187 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC17.03■□□□□ 0.32
Cbx4O55187 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.03■□□□□ 0.32
Cbx4O55187 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cbx4O55187 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cbx4O55187 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cbx4O55187 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Cbx4O55187 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.03■□□□□ 0.32
Cbx4O55187 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cbx4O55187 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC17.03■□□□□ 0.32
Cbx4O55187 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cbx4O55187 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Cbx4O55187 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cbx4O55187 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cbx4O55187 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC17.02■□□□□ 0.32
Cbx4O55187 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC17.02■□□□□ 0.32
Cbx4O55187 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Cbx4O55187 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cbx4O55187 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Cbx4O55187 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cbx4O55187 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cbx4O55187 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cbx4O55187 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cbx4O55187 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
Cbx4O55187 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Cbx4O55187 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cbx4O55187 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cbx4O55187 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cbx4O55187 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cbx4O55187 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
Cbx4O55187 Gm12382-201ENSMUST00000122005 922 ntBASIC17.01■□□□□ 0.31
Cbx4O55187 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC17.01■□□□□ 0.31
Cbx4O55187 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cbx4O55187 Gm37292-201ENSMUST00000192062 758 ntBASIC17.01■□□□□ 0.31
Cbx4O55187 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.01■□□□□ 0.31
Cbx4O55187 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cbx4O55187 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cbx4O55187 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms