Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm26971-201ENSMUST00000182423 1072 ntBASIC14.49□□□□□ -0.09
Hmgb3O54879 Gm27032-201ENSMUST00000183124 1116 ntBASIC14.49□□□□□ -0.09
Hmgb3O54879 Gm19094-201ENSMUST00000209791 1246 ntBASIC14.49□□□□□ -0.09
Hmgb3O54879 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC14.49□□□□□ -0.09
Hmgb3O54879 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Hmgb3O54879 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC14.49□□□□□ -0.09
Hmgb3O54879 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Hmgb3O54879 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC14.48□□□□□ -0.09
Hmgb3O54879 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC14.48□□□□□ -0.09
Hmgb3O54879 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC14.48□□□□□ -0.09
Hmgb3O54879 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hmgb3O54879 Gm45412-201ENSMUST00000210217 2275 ntBASIC14.48□□□□□ -0.09
Hmgb3O54879 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Hmgb3O54879 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC14.47□□□□□ -0.09
Hmgb3O54879 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
Hmgb3O54879 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Hmgb3O54879 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Hmgb3O54879 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Gm38205-201ENSMUST00000192243 258 ntBASIC14.47□□□□□ -0.09
Hmgb3O54879 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC14.47□□□□□ -0.09
Hmgb3O54879 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Hmgb3O54879 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC14.47□□□□□ -0.09
Hmgb3O54879 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Hmgb3O54879 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Hmgb3O54879 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Smad6-203ENSMUST00000179458 273 ntBASIC14.46□□□□□ -0.09
Hmgb3O54879 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Hmgb3O54879 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Hmgb3O54879 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Hmgb3O54879 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
Hmgb3O54879 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Hmgb3O54879 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Hmgb3O54879 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Hmgb3O54879 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Hmgb3O54879 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Hmgb3O54879 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 100.7 ms