Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm18669-201ENSMUST00000216049 778 ntBASIC20.78■□□□□ 0.92
Scn11aQ9R053 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn11aQ9R053 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn11aQ9R053 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Scn11aQ9R053 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Scn11aQ9R053 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC20.77■□□□□ 0.92
Scn11aQ9R053 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC20.77■□□□□ 0.92
Scn11aQ9R053 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC20.77■□□□□ 0.92
Scn11aQ9R053 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Scn11aQ9R053 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Scn11aQ9R053 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Scn11aQ9R053 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Scn11aQ9R053 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Scn11aQ9R053 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Scn11aQ9R053 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC20.77■□□□□ 0.91
Scn11aQ9R053 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Scn11aQ9R053 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC20.77■□□□□ 0.91
Scn11aQ9R053 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Scn11aQ9R053 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Scn11aQ9R053 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Scn11aQ9R053 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Scn11aQ9R053 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
Scn11aQ9R053 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Gm27704-201ENSMUST00000185094 107 ntBASIC20.76■□□□□ 0.91
Scn11aQ9R053 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn11aQ9R053 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn11aQ9R053 AW822252-206ENSMUST00000208904 237 ntBASIC20.76■□□□□ 0.91
Scn11aQ9R053 Gm21559-201ENSMUST00000220638 855 ntBASIC20.76■□□□□ 0.91
Scn11aQ9R053 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Gm8587-201ENSMUST00000076538 843 ntBASIC20.76■□□□□ 0.91
Scn11aQ9R053 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Scn11aQ9R053 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn11aQ9R053 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn11aQ9R053 Gm11860-201ENSMUST00000122346 1010 ntBASIC20.75■□□□□ 0.91
Scn11aQ9R053 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Scn11aQ9R053 Gm37722-201ENSMUST00000193757 208 ntBASIC20.75■□□□□ 0.91
Scn11aQ9R053 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn11aQ9R053 AC154855.1-201ENSMUST00000227353 1458 ntBASIC20.75■□□□□ 0.91
Scn11aQ9R053 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn11aQ9R053 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn11aQ9R053 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Scn11aQ9R053 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn11aQ9R053 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Scn11aQ9R053 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn11aQ9R053 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC20.74■□□□□ 0.91
Scn11aQ9R053 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Gm43514-201ENSMUST00000198852 424 ntBASIC20.74■□□□□ 0.91
Scn11aQ9R053 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC20.74■□□□□ 0.91
Scn11aQ9R053 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Gm27389-201ENSMUST00000183622 195 ntBASIC20.74■□□□□ 0.91
Scn11aQ9R053 AC164629.2-201ENSMUST00000217916 270 ntBASIC20.74■□□□□ 0.91
Scn11aQ9R053 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn11aQ9R053 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scn11aQ9R053 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scn11aQ9R053 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Scn11aQ9R053 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Scn11aQ9R053 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scn11aQ9R053 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scn11aQ9R053 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC20.73■□□□□ 0.91
Scn11aQ9R053 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scn11aQ9R053 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
Scn11aQ9R053 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Gm27000-201ENSMUST00000182943 842 ntBASIC20.72■□□□□ 0.91
Scn11aQ9R053 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Gm29518-201ENSMUST00000190858 372 ntBASIC20.72■□□□□ 0.91
Scn11aQ9R053 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 11.3 ms