Protein–RNA interactions for Protein: Q9QUM7

Msh5, MutS protein homolog 5, mousemouse

Predictions only

Length 833 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh5Q9QUM7 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.82■□□□□ 0.44
Msh5Q9QUM7 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh5Q9QUM7 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Msh5Q9QUM7 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh5Q9QUM7 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Msh5Q9QUM7 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh5Q9QUM7 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Msh5Q9QUM7 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh5Q9QUM7 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Msh5Q9QUM7 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh5Q9QUM7 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Msh5Q9QUM7 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Msh5Q9QUM7 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Gm43294-201ENSMUST00000202850 2490 ntBASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.81■□□□□ 0.44
Msh5Q9QUM7 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Gm11569-201ENSMUST00000105057 869 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh5Q9QUM7 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC17.79■□□□□ 0.44
Msh5Q9QUM7 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Msh5Q9QUM7 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh5Q9QUM7 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh5Q9QUM7 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Msh5Q9QUM7 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.77■□□□□ 0.44
Msh5Q9QUM7 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh5Q9QUM7 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
Msh5Q9QUM7 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC17.77■□□□□ 0.44
Msh5Q9QUM7 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms