Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
Cpsf1Q9EPU4 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC24.18■■□□□ 1.46
Cpsf1Q9EPU4 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Cpsf1Q9EPU4 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Cpsf1Q9EPU4 Mir1668-201ENSMUST00000184114 107 ntBASIC24.18■■□□□ 1.46
Cpsf1Q9EPU4 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC24.18■■□□□ 1.46
Cpsf1Q9EPU4 Gm10459-201ENSMUST00000202708 1155 ntBASIC24.18■■□□□ 1.46
Cpsf1Q9EPU4 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Cpsf1Q9EPU4 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Cpsf1Q9EPU4 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Cpsf1Q9EPU4 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Cpsf1Q9EPU4 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Cpsf1Q9EPU4 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC24.17■■□□□ 1.46
Cpsf1Q9EPU4 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Cpsf1Q9EPU4 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Cpsf1Q9EPU4 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Cpsf1Q9EPU4 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC24.16■■□□□ 1.46
Cpsf1Q9EPU4 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Cpsf1Q9EPU4 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Cpsf1Q9EPU4 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC24.16■■□□□ 1.46
Cpsf1Q9EPU4 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Cpsf1Q9EPU4 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Cpsf1Q9EPU4 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Cpsf1Q9EPU4 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Spsb2-203ENSMUST00000112473 1322 ntBASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Gm6728-201ENSMUST00000178117 1065 ntBASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Gm18101-201ENSMUST00000215769 548 ntBASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Cpsf1Q9EPU4 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Cpsf1Q9EPU4 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.45
Cpsf1Q9EPU4 AA414768-201ENSMUST00000121924 1257 ntBASIC24.14■■□□□ 1.45
Cpsf1Q9EPU4 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC24.14■■□□□ 1.45
Cpsf1Q9EPU4 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC24.14■■□□□ 1.45
Cpsf1Q9EPU4 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
Cpsf1Q9EPU4 Gm10819-201ENSMUST00000099988 561 ntBASIC24.14■■□□□ 1.45
Cpsf1Q9EPU4 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
Cpsf1Q9EPU4 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
Cpsf1Q9EPU4 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Zcchc6-207ENSMUST00000225576 2499 ntBASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Gm21362-201ENSMUST00000194272 928 ntBASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 AC154855.1-201ENSMUST00000227353 1458 ntBASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Fcho2-208ENSMUST00000224992 2964 ntBASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Cpsf1Q9EPU4 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
Cpsf1Q9EPU4 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Cpsf1Q9EPU4 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Cpsf1Q9EPU4 Gm27000-201ENSMUST00000182943 842 ntBASIC24.12■■□□□ 1.45
Cpsf1Q9EPU4 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Cpsf1Q9EPU4 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Cpsf1Q9EPU4 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Cpsf1Q9EPU4 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Cpsf1Q9EPU4 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Cpsf1Q9EPU4 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
Cpsf1Q9EPU4 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
Cpsf1Q9EPU4 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC24.11■■□□□ 1.45
Cpsf1Q9EPU4 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Cpsf1Q9EPU4 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC24.1■■□□□ 1.45
Cpsf1Q9EPU4 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
Cpsf1Q9EPU4 Gm33142-201ENSMUST00000193913 867 ntBASIC24.1■■□□□ 1.45
Cpsf1Q9EPU4 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Cpsf1Q9EPU4 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC24.1■■□□□ 1.45
Cpsf1Q9EPU4 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms