Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdc40Q9DC48 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 Zfp783-201ENSMUST00000095946 670 ntBASIC16.22■□□□□ 0.19
Cdc40Q9DC48 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdc40Q9DC48 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Gm5828-201ENSMUST00000071842 1860 ntBASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdc40Q9DC48 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.18
Cdc40Q9DC48 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Cdc40Q9DC48 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Cdc40Q9DC48 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Cdc40Q9DC48 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Gm37374-201ENSMUST00000194954 1829 ntBASIC16.2■□□□□ 0.18
Cdc40Q9DC48 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Cdc40Q9DC48 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Dmtn-207ENSMUST00000228001 2437 ntBASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
Cdc40Q9DC48 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Gm10138-203ENSMUST00000206952 366 ntBASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Cdc40Q9DC48 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC16.17■□□□□ 0.18
Cdc40Q9DC48 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdc40Q9DC48 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdc40Q9DC48 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cdc40Q9DC48 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cdc40Q9DC48 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cdc40Q9DC48 Gm20472-201ENSMUST00000174403 1240 ntBASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms