Protein–RNA interactions for Protein: Q9D5Y1

Ccdc39, Coiled-coil domain-containing protein 39, mousemouse

Predictions only

Length 937 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc39Q9D5Y1 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
Ccdc39Q9D5Y1 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Gm6433-201ENSMUST00000118634 875 ntBASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc39Q9D5Y1 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Gm13559-201ENSMUST00000120476 863 ntBASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Gm38027-201ENSMUST00000192315 235 ntBASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc39Q9D5Y1 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Idnk-204ENSMUST00000226010 1898 ntBASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc39Q9D5Y1 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Gm8668-201ENSMUST00000120559 1447 ntBASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.67■□□□□ 0.9
Ccdc39Q9D5Y1 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc39Q9D5Y1 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc39Q9D5Y1 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc39Q9D5Y1 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc39Q9D5Y1 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc39Q9D5Y1 Gm7889-201ENSMUST00000185591 958 ntBASIC20.66■□□□□ 0.9
Ccdc39Q9D5Y1 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Ccdc39Q9D5Y1 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc39Q9D5Y1 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc39Q9D5Y1 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc39Q9D5Y1 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc39Q9D5Y1 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc39Q9D5Y1 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc39Q9D5Y1 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc39Q9D5Y1 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc39Q9D5Y1 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc39Q9D5Y1 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc39Q9D5Y1 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc39Q9D5Y1 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms