Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpp40Q8R1F9 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Gm11539-201ENSMUST00000119837 557 ntBASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Gm13436-201ENSMUST00000120418 567 ntBASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Rpp40Q8R1F9 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Gm7638-201ENSMUST00000121348 967 ntBASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.71■□□□□ 0.59
Rpp40Q8R1F9 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
Rpp40Q8R1F9 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
Rpp40Q8R1F9 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.7■□□□□ 0.58
Rpp40Q8R1F9 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Gm13559-201ENSMUST00000120476 863 ntBASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rpp40Q8R1F9 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpp40Q8R1F9 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms