Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim56Q80VI1 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Trim56Q80VI1 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim56Q80VI1 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.62■□□□□ 0.89
Trim56Q80VI1 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim56Q80VI1 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trim56Q80VI1 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim56Q80VI1 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC20.62■□□□□ 0.89
Trim56Q80VI1 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim56Q80VI1 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim56Q80VI1 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim56Q80VI1 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim56Q80VI1 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trim56Q80VI1 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim56Q80VI1 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC20.62■□□□□ 0.89
Trim56Q80VI1 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim56Q80VI1 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Gm7638-201ENSMUST00000121348 967 ntBASIC20.61■□□□□ 0.89
Trim56Q80VI1 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim56Q80VI1 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Trim56Q80VI1 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
Trim56Q80VI1 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim56Q80VI1 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Trim56Q80VI1 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC20.6■□□□□ 0.89
Trim56Q80VI1 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Trim56Q80VI1 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim56Q80VI1 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC20.6■□□□□ 0.89
Trim56Q80VI1 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim56Q80VI1 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim56Q80VI1 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Gm13559-201ENSMUST00000120476 863 ntBASIC20.59■□□□□ 0.89
Trim56Q80VI1 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Dapk1-207ENSMUST00000226059 5009 ntBASIC20.59■□□□□ 0.89
Trim56Q80VI1 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim56Q80VI1 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
Trim56Q80VI1 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim56Q80VI1 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim56Q80VI1 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
Trim56Q80VI1 Mir7071-201ENSMUST00000184847 69 ntBASIC20.58■□□□□ 0.89
Trim56Q80VI1 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC20.58■□□□□ 0.89
Trim56Q80VI1 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC20.58■□□□□ 0.89
Trim56Q80VI1 AC153881.2-201ENSMUST00000214877 204 ntBASIC20.58■□□□□ 0.89
Trim56Q80VI1 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC20.58■□□□□ 0.89
Trim56Q80VI1 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim56Q80VI1 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim56Q80VI1 Gm45606-201ENSMUST00000209836 2795 ntBASIC20.58■□□□□ 0.88
Trim56Q80VI1 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim56Q80VI1 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Trim56Q80VI1 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim56Q80VI1 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim56Q80VI1 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Trim56Q80VI1 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim56Q80VI1 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Trim56Q80VI1 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Gm43353-201ENSMUST00000199224 1295 ntBASIC20.57■□□□□ 0.88
Trim56Q80VI1 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim56Q80VI1 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms