Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ubfd1Q78JW9 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ubfd1Q78JW9 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Ubfd1Q78JW9 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ubfd1Q78JW9 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ubfd1Q78JW9 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ubfd1Q78JW9 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Ubfd1Q78JW9 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 Mir8112-201ENSMUST00000184382 131 ntBASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ubfd1Q78JW9 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ubfd1Q78JW9 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ubfd1Q78JW9 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ubfd1Q78JW9 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Gm9731-201ENSMUST00000209480 747 ntBASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Gm7791-201ENSMUST00000219066 539 ntBASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ubfd1Q78JW9 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ubfd1Q78JW9 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
Ubfd1Q78JW9 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Ubfd1Q78JW9 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17■□□□□ 0.31
Ubfd1Q78JW9 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC17■□□□□ 0.31
Ubfd1Q78JW9 Mir5130-201ENSMUST00000175160 84 ntBASIC17■□□□□ 0.31
Ubfd1Q78JW9 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17■□□□□ 0.31
Ubfd1Q78JW9 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17■□□□□ 0.31
Ubfd1Q78JW9 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ubfd1Q78JW9 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Ubfd1Q78JW9 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ubfd1Q78JW9 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ubfd1Q78JW9 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Gm43272-201ENSMUST00000200599 1584 ntBASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Il3ra-202ENSMUST00000223589 738 ntBASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Ubfd1Q78JW9 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Gm16061-201ENSMUST00000122167 857 ntBASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ubfd1Q78JW9 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 Gm13474-201ENSMUST00000122466 815 ntBASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ubfd1Q78JW9 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Ubfd1Q78JW9 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ubfd1Q78JW9 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC16.96■□□□□ 0.31
Ubfd1Q78JW9 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms