Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scaf4Q6PFF0 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.27■□□□□ 0.36
Scaf4Q6PFF0 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scaf4Q6PFF0 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Scaf4Q6PFF0 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scaf4Q6PFF0 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Scaf4Q6PFF0 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scaf4Q6PFF0 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scaf4Q6PFF0 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scaf4Q6PFF0 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC17.27■□□□□ 0.35
Scaf4Q6PFF0 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scaf4Q6PFF0 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scaf4Q6PFF0 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Gm38285-201ENSMUST00000192928 922 ntBASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Gm7514-201ENSMUST00000209475 934 ntBASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 AC140264.2-202ENSMUST00000218746 817 ntBASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scaf4Q6PFF0 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 AC108858.1-201ENSMUST00000228461 1498 ntBASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Gm43272-201ENSMUST00000200599 1584 ntBASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scaf4Q6PFF0 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scaf4Q6PFF0 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Gm10493-201ENSMUST00000097270 612 ntBASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scaf4Q6PFF0 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scaf4Q6PFF0 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scaf4Q6PFF0 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scaf4Q6PFF0 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.22■□□□□ 0.35
Scaf4Q6PFF0 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scaf4Q6PFF0 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scaf4Q6PFF0 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scaf4Q6PFF0 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scaf4Q6PFF0 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scaf4Q6PFF0 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scaf4Q6PFF0 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scaf4Q6PFF0 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms