Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.22■□□□□ 0.67
CtcfQ61164 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CtcfQ61164 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CtcfQ61164 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CtcfQ61164 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC19.22■□□□□ 0.67
CtcfQ61164 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Gm10461-201ENSMUST00000202073 4786 ntBASIC19.21■□□□□ 0.67
CtcfQ61164 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CtcfQ61164 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CtcfQ61164 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CtcfQ61164 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC19.21■□□□□ 0.67
CtcfQ61164 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
CtcfQ61164 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CtcfQ61164 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.21■□□□□ 0.67
CtcfQ61164 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CtcfQ61164 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CtcfQ61164 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC19.19■□□□□ 0.66
CtcfQ61164 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CtcfQ61164 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CtcfQ61164 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CtcfQ61164 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.19■□□□□ 0.66
CtcfQ61164 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CtcfQ61164 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CtcfQ61164 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CtcfQ61164 Mtag2-201ENSMUST00000058665 714 ntBASIC19.19■□□□□ 0.66
CtcfQ61164 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CtcfQ61164 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CtcfQ61164 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CtcfQ61164 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CtcfQ61164 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CtcfQ61164 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CtcfQ61164 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CtcfQ61164 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CtcfQ61164 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CtcfQ61164 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CtcfQ61164 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CtcfQ61164 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CtcfQ61164 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CtcfQ61164 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CtcfQ61164 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CtcfQ61164 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CtcfQ61164 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CtcfQ61164 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CtcfQ61164 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CtcfQ61164 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.17■□□□□ 0.66
CtcfQ61164 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC19.17■□□□□ 0.66
CtcfQ61164 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC19.17■□□□□ 0.66
CtcfQ61164 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CtcfQ61164 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
CtcfQ61164 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 59.6 ms