Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cln3Q61124 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cln3Q61124 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cln3Q61124 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cln3Q61124 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cln3Q61124 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.2■□□□□ 0.66
Cln3Q61124 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Cln3Q61124 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC19.2■□□□□ 0.66
Cln3Q61124 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cln3Q61124 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cln3Q61124 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC19.2■□□□□ 0.66
Cln3Q61124 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC19.2■□□□□ 0.66
Cln3Q61124 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cln3Q61124 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC19.2■□□□□ 0.66
Cln3Q61124 Gm18669-201ENSMUST00000216049 778 ntBASIC19.2■□□□□ 0.66
Cln3Q61124 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cln3Q61124 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC19.2■□□□□ 0.66
Cln3Q61124 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cln3Q61124 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cln3Q61124 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cln3Q61124 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cln3Q61124 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Cln3Q61124 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cln3Q61124 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cln3Q61124 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cln3Q61124 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cln3Q61124 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cln3Q61124 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Cln3Q61124 Gm37722-201ENSMUST00000193757 208 ntBASIC19.19■□□□□ 0.66
Cln3Q61124 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cln3Q61124 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cln3Q61124 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Cln3Q61124 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cln3Q61124 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Cln3Q61124 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC19.18■□□□□ 0.66
Cln3Q61124 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC19.18■□□□□ 0.66
Cln3Q61124 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Cln3Q61124 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 Mir770-201ENSMUST00000103252 94 ntBASIC19.18■□□□□ 0.66
Cln3Q61124 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC19.18■□□□□ 0.66
Cln3Q61124 Mir8112-201ENSMUST00000184382 131 ntBASIC19.18■□□□□ 0.66
Cln3Q61124 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 Gm7461-201ENSMUST00000058918 827 ntBASIC19.18■□□□□ 0.66
Cln3Q61124 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Cln3Q61124 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.18■□□□□ 0.66
Cln3Q61124 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Cln3Q61124 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cln3Q61124 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC19.17■□□□□ 0.66
Cln3Q61124 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Cln3Q61124 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Cln3Q61124 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Cln3Q61124 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Cln3Q61124 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cln3Q61124 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC19.16■□□□□ 0.66
Cln3Q61124 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cln3Q61124 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cln3Q61124 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cln3Q61124 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
Cln3Q61124 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.16■□□□□ 0.66
Cln3Q61124 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cln3Q61124 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cln3Q61124 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cln3Q61124 Gm6623-201ENSMUST00000173570 544 ntBASIC19.16■□□□□ 0.66
Cln3Q61124 Otx2os1-206ENSMUST00000228153 787 ntBASIC19.16■□□□□ 0.66
Cln3Q61124 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cln3Q61124 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cln3Q61124 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cln3Q61124 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Cln3Q61124 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cln3Q61124 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cln3Q61124 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Cln3Q61124 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cln3Q61124 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cln3Q61124 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC19.15■□□□□ 0.66
Cln3Q61124 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cln3Q61124 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cln3Q61124 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Cln3Q61124 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cln3Q61124 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms