Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.87■□□□□ 0.77
Usp28Q5I043 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp28Q5I043 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp28Q5I043 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp28Q5I043 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp28Q5I043 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp28Q5I043 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp28Q5I043 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.86■□□□□ 0.77
Usp28Q5I043 Gm16499-203ENSMUST00000204633 2177 ntBASIC19.86■□□□□ 0.77
Usp28Q5I043 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp28Q5I043 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.86■□□□□ 0.77
Usp28Q5I043 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp28Q5I043 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC19.86■□□□□ 0.77
Usp28Q5I043 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC19.86■□□□□ 0.77
Usp28Q5I043 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Usp28Q5I043 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.86■□□□□ 0.77
Usp28Q5I043 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Usp28Q5I043 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp28Q5I043 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp28Q5I043 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Usp28Q5I043 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Usp28Q5I043 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp28Q5I043 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC19.86■□□□□ 0.77
Usp28Q5I043 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC19.85■□□□□ 0.77
Usp28Q5I043 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp28Q5I043 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC19.85■□□□□ 0.77
Usp28Q5I043 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp28Q5I043 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC19.85■□□□□ 0.77
Usp28Q5I043 Gm2559-201ENSMUST00000201323 363 ntBASIC19.85■□□□□ 0.77
Usp28Q5I043 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19.85■□□□□ 0.77
Usp28Q5I043 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp28Q5I043 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp28Q5I043 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp28Q5I043 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Usp28Q5I043 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp28Q5I043 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Usp28Q5I043 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp28Q5I043 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Usp28Q5I043 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp28Q5I043 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp28Q5I043 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp28Q5I043 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Usp28Q5I043 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Usp28Q5I043 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.84■□□□□ 0.77
Usp28Q5I043 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp28Q5I043 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC19.83■□□□□ 0.77
Usp28Q5I043 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp28Q5I043 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp28Q5I043 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp28Q5I043 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp28Q5I043 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC19.83■□□□□ 0.77
Usp28Q5I043 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19.83■□□□□ 0.77
Usp28Q5I043 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.83■□□□□ 0.77
Usp28Q5I043 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.83■□□□□ 0.77
Usp28Q5I043 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp28Q5I043 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp28Q5I043 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.83■□□□□ 0.76
Usp28Q5I043 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Usp28Q5I043 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp28Q5I043 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp28Q5I043 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp28Q5I043 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC19.83■□□□□ 0.76
Usp28Q5I043 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp28Q5I043 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Usp28Q5I043 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp28Q5I043 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp28Q5I043 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
Usp28Q5I043 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp28Q5I043 Gm11249-201ENSMUST00000117071 859 ntBASIC19.82■□□□□ 0.76
Usp28Q5I043 Mir6349-201ENSMUST00000184059 97 ntBASIC19.82■□□□□ 0.76
Usp28Q5I043 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.82■□□□□ 0.76
Usp28Q5I043 Gm10138-203ENSMUST00000206952 366 ntBASIC19.82■□□□□ 0.76
Usp28Q5I043 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Usp28Q5I043 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC19.82■□□□□ 0.76
Usp28Q5I043 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
Usp28Q5I043 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Usp28Q5I043 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Usp28Q5I043 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC19.82■□□□□ 0.76
Usp28Q5I043 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp28Q5I043 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp28Q5I043 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Usp28Q5I043 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Usp28Q5I043 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Usp28Q5I043 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Usp28Q5I043 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Usp28Q5I043 Gm12896-201ENSMUST00000118430 226 ntBASIC19.81■□□□□ 0.76
Usp28Q5I043 Gm15375-201ENSMUST00000119510 849 ntBASIC19.81■□□□□ 0.76
Usp28Q5I043 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms