Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3bQ3ULL6 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3bQ3ULL6 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.69■□□□□ 0.58
Upf3bQ3ULL6 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3bQ3ULL6 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3bQ3ULL6 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3bQ3ULL6 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3bQ3ULL6 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3bQ3ULL6 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.69■□□□□ 0.58
Upf3bQ3ULL6 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3bQ3ULL6 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3bQ3ULL6 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Mir1199-201ENSMUST00000117015 119 ntBASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Gm10517-202ENSMUST00000192970 758 ntBASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3bQ3ULL6 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Mir8112-201ENSMUST00000184382 131 ntBASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Arhgef33-211ENSMUST00000225658 473 ntBASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3bQ3ULL6 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 Gm4974-201ENSMUST00000209974 875 ntBASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Upf3bQ3ULL6 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Gm8969-201ENSMUST00000199694 526 ntBASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 AC175538.1-201ENSMUST00000225343 1269 ntBASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC18.65■□□□□ 0.58
Upf3bQ3ULL6 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Upf3bQ3ULL6 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.64■□□□□ 0.57
Upf3bQ3ULL6 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms