Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col1a1P11087 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col1a1P11087 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC20.48■□□□□ 0.87
Col1a1P11087 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col1a1P11087 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col1a1P11087 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Col1a1P11087 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Col1a1P11087 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col1a1P11087 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col1a1P11087 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Col1a1P11087 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col1a1P11087 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col1a1P11087 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC20.47■□□□□ 0.87
Col1a1P11087 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col1a1P11087 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Col1a1P11087 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col1a1P11087 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col1a1P11087 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col1a1P11087 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Col1a1P11087 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col1a1P11087 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col1a1P11087 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Col1a1P11087 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC20.46■□□□□ 0.87
Col1a1P11087 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Col1a1P11087 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col1a1P11087 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col1a1P11087 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col1a1P11087 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col1a1P11087 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col1a1P11087 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
Col1a1P11087 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 AC124569.2-201ENSMUST00000225998 818 ntBASIC20.45■□□□□ 0.86
Col1a1P11087 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Col1a1P11087 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Col1a1P11087 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC20.45■□□□□ 0.86
Col1a1P11087 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Col1a1P11087 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC20.45■□□□□ 0.86
Col1a1P11087 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col1a1P11087 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC20.44■□□□□ 0.86
Col1a1P11087 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col1a1P11087 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC20.44■□□□□ 0.86
Col1a1P11087 Mir8112-201ENSMUST00000184382 131 ntBASIC20.44■□□□□ 0.86
Col1a1P11087 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC20.44■□□□□ 0.86
Col1a1P11087 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col1a1P11087 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Col1a1P11087 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Col1a1P11087 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col1a1P11087 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.44■□□□□ 0.86
Col1a1P11087 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col1a1P11087 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col1a1P11087 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col1a1P11087 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
Col1a1P11087 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC20.43■□□□□ 0.86
Col1a1P11087 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC20.43■□□□□ 0.86
Col1a1P11087 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC20.43■□□□□ 0.86
Col1a1P11087 AW822252-206ENSMUST00000208904 237 ntBASIC20.43■□□□□ 0.86
Col1a1P11087 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col1a1P11087 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col1a1P11087 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col1a1P11087 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col1a1P11087 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col1a1P11087 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col1a1P11087 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Col1a1P11087 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col1a1P11087 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.43■□□□□ 0.86
Col1a1P11087 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col1a1P11087 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Col1a1P11087 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Col1a1P11087 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col1a1P11087 AC153889.1-201ENSMUST00000219257 330 ntBASIC20.43■□□□□ 0.86
Col1a1P11087 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col1a1P11087 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col1a1P11087 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col1a1P11087 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Col1a1P11087 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Col1a1P11087 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC20.42■□□□□ 0.86
Col1a1P11087 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col1a1P11087 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC20.42■□□□□ 0.86
Col1a1P11087 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Col1a1P11087 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col1a1P11087 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col1a1P11087 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC20.41■□□□□ 0.86
Col1a1P11087 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC20.41■□□□□ 0.86
Col1a1P11087 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col1a1P11087 Gm37374-201ENSMUST00000194954 1829 ntBASIC20.41■□□□□ 0.86
Col1a1P11087 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col1a1P11087 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Col1a1P11087 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col1a1P11087 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col1a1P11087 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms