Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Chmp6P0C0A3 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Chmp6P0C0A3 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
Chmp6P0C0A3 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Chmp6P0C0A3 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19■□□□□ 0.63
Chmp6P0C0A3 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Chmp6P0C0A3 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Chmp6P0C0A3 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Chmp6P0C0A3 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Chmp6P0C0A3 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC19■□□□□ 0.63
Chmp6P0C0A3 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Chmp6P0C0A3 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Chmp6P0C0A3 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Gm10698-201ENSMUST00000182663 604 ntBASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chmp6P0C0A3 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.97■□□□□ 0.63
Chmp6P0C0A3 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Gm42545-201ENSMUST00000202755 922 ntBASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC18.97■□□□□ 0.63
Chmp6P0C0A3 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.96■□□□□ 0.63
Chmp6P0C0A3 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
Chmp6P0C0A3 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Chmp6P0C0A3 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Chmp6P0C0A3 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
Chmp6P0C0A3 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC18.95■□□□□ 0.62
Chmp6P0C0A3 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.95■□□□□ 0.62
Chmp6P0C0A3 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.95■□□□□ 0.62
Chmp6P0C0A3 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Chmp6P0C0A3 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.95■□□□□ 0.62
Chmp6P0C0A3 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Chmp6P0C0A3 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Chmp6P0C0A3 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.95■□□□□ 0.62
Chmp6P0C0A3 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms