Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hmgb3O54879 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Hmgb3O54879 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC14.53□□□□□ -0.08
Hmgb3O54879 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC14.53□□□□□ -0.08
Hmgb3O54879 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC14.53□□□□□ -0.08
Hmgb3O54879 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC14.53□□□□□ -0.08
Hmgb3O54879 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC14.53□□□□□ -0.08
Hmgb3O54879 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.08
Hmgb3O54879 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hmgb3O54879 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Hmgb3O54879 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Hmgb3O54879 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Hmgb3O54879 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Hmgb3O54879 Tgds-204ENSMUST00000228543 1594 ntBASIC14.52□□□□□ -0.08
Hmgb3O54879 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Hmgb3O54879 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Hmgb3O54879 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Hmgb3O54879 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Hmgb3O54879 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Hmgb3O54879 AC107452.1-201ENSMUST00000227963 481 ntBASIC14.52□□□□□ -0.09
Hmgb3O54879 Hivep3-201ENSMUST00000084306 2973 ntBASIC14.52□□□□□ -0.09
Hmgb3O54879 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Hmgb3O54879 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Hmgb3O54879 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Hmgb3O54879 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Hmgb3O54879 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Hmgb3O54879 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Hmgb3O54879 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC14.51□□□□□ -0.09
Hmgb3O54879 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC14.51□□□□□ -0.09
Hmgb3O54879 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC14.51□□□□□ -0.09
Hmgb3O54879 Gm45102-201ENSMUST00000207427 857 ntBASIC14.51□□□□□ -0.09
Hmgb3O54879 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Hmgb3O54879 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC14.51□□□□□ -0.09
Hmgb3O54879 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Hmgb3O54879 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC14.5□□□□□ -0.09
Hmgb3O54879 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Gm12922-201ENSMUST00000120626 809 ntBASIC14.5□□□□□ -0.09
Hmgb3O54879 Gm27801-201ENSMUST00000184174 223 ntBASIC14.5□□□□□ -0.09
Hmgb3O54879 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC14.5□□□□□ -0.09
Hmgb3O54879 Rps24-207ENSMUST00000224568 714 ntBASIC14.5□□□□□ -0.09
Hmgb3O54879 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Hmgb3O54879 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.5□□□□□ -0.09
Hmgb3O54879 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Hmgb3O54879 Gm37374-201ENSMUST00000194954 1829 ntBASIC14.5□□□□□ -0.09
Hmgb3O54879 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
Hmgb3O54879 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hmgb3O54879 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC14.49□□□□□ -0.09
Hmgb3O54879 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
Hmgb3O54879 Gm37519-201ENSMUST00000191687 2210 ntBASIC14.49□□□□□ -0.09
Hmgb3O54879 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC14.49□□□□□ -0.09
Hmgb3O54879 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hmgb3O54879 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC14.49□□□□□ -0.09
Hmgb3O54879 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms