Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Dcun1d1-203ENSMUST00000178098 4434 ntTSL 5 BASIC6.43□□□□□ -1.38
Ccdc88bQ4QRL3 AC158115.2-201ENSMUST00000221804 5563 ntTSL 5 BASIC6.43□□□□□ -1.38
Ccdc88bQ4QRL3 Olfr1459-202ENSMUST00000213493 8854 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
Ccdc88bQ4QRL3 Vmn1r215-202ENSMUST00000228092 2790 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
Ccdc88bQ4QRL3 Gm45854-201ENSMUST00000211857 3488 ntBASIC6.43□□□□□ -1.38
Ccdc88bQ4QRL3 Gm18954-201ENSMUST00000222200 1792 ntBASIC6.43□□□□□ -1.38
Ccdc88bQ4QRL3 Vmn2r-ps119-201ENSMUST00000177481 2406 ntBASIC6.43□□□□□ -1.38
Ccdc88bQ4QRL3 Malrd1-201ENSMUST00000146205 6738 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Trav12d-2-201ENSMUST00000103593 341 ntAPPRIS ALT2 BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Trav12n-2-201ENSMUST00000103619 341 ntAPPRIS ALT2 BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm15926-201ENSMUST00000120492 550 ntBASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm6264-202ENSMUST00000162896 1217 ntBASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Vmn1r167-201ENSMUST00000164527 948 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm6625-201ENSMUST00000177870 272 ntBASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm28514-201ENSMUST00000187488 450 ntTSL 2 BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm37947-201ENSMUST00000192740 894 ntTSL 5 BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm18903-201ENSMUST00000215343 480 ntBASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm34158-201ENSMUST00000216390 567 ntTSL 5 BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm24626-201ENSMUST00000082621 161 ntBASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Scn9a-207ENSMUST00000169900 7497 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Nlrp4f-201ENSMUST00000037372 3527 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm14062-201ENSMUST00000134795 4134 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Olfr2-206ENSMUST00000216375 5828 ntAPPRIS P1 TSL 3 BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm15902-202ENSMUST00000219623 3477 ntBASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Zfp458-204ENSMUST00000225772 3485 ntAPPRIS ALT2 BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Zfp458-201ENSMUST00000045969 3488 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Cr2-202ENSMUST00000082321 6207 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Cnot2-213ENSMUST00000169921 2120 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm3604-201ENSMUST00000107989 1677 ntTSL 5 BASIC6.42□□□□□ -1.38
Ccdc88bQ4QRL3 Gm38073-201ENSMUST00000195141 3665 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm11566-201ENSMUST00000118550 203 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 n-R5s201-201ENSMUST00000122622 116 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm14618-201ENSMUST00000149377 740 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Cylc2-203ENSMUST00000166749 1297 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm8298-201ENSMUST00000179799 1206 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm29104-201ENSMUST00000186304 222 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm37239-201ENSMUST00000193510 141 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm43449-201ENSMUST00000202955 371 ntTSL 3 BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm35876-201ENSMUST00000205044 459 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Olfr752-ps1-201ENSMUST00000208736 1141 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm45379-201ENSMUST00000211772 549 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Ank2-207ENSMUST00000182064 12413 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Olfr1031-202ENSMUST00000216807 1946 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 1700017N19Rik-206ENSMUST00000190386 1483 ntTSL 5 BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Olfr350-203ENSMUST00000215100 2086 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm45149-201ENSMUST00000206459 2172 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm5590-202ENSMUST00000186976 2315 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Olfr1500-204ENSMUST00000215760 2305 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Rbm41-204ENSMUST00000113011 3728 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 n-R5s68-201ENSMUST00000122639 82 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm12534-201ENSMUST00000147691 469 ntTSL 3 BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm15795-201ENSMUST00000160969 553 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 1700024B18Rik-201ENSMUST00000190088 423 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm36943-201ENSMUST00000194422 282 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm7439-201ENSMUST00000214053 835 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Gm35552-201ENSMUST00000214355 396 ntTSL 5 BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 AC118733.1-201ENSMUST00000217387 1217 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 AC132237.2-201ENSMUST00000221702 1209 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 AC130547.1-201ENSMUST00000228079 1047 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 AC127371.1-201ENSMUST00000228516 312 ntBASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Vmn1r81-201ENSMUST00000086232 921 ntAPPRIS P2 BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Tas2r115-201ENSMUST00000095394 1033 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
Ccdc88bQ4QRL3 Usp9x-201ENSMUST00000089302 11887 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
Ccdc88bQ4QRL3 2310057J18Rik-202ENSMUST00000140558 1445 ntTSL 5 BASIC6.4□□□□□ -1.38
Ccdc88bQ4QRL3 Adgb-205ENSMUST00000179956 5218 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
Ccdc88bQ4QRL3 Olfr1309-202ENSMUST00000214537 4274 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
Ccdc88bQ4QRL3 Sult1d1-201ENSMUST00000113314 2420 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
Ccdc88bQ4QRL3 Ralgapa1-211ENSMUST00000220367 7473 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
Ccdc88bQ4QRL3 Olfr1312-203ENSMUST00000213961 5345 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
Ccdc88bQ4QRL3 Btbd35f23-201ENSMUST00000189190 1943 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
Ccdc88bQ4QRL3 Gm38207-201ENSMUST00000193009 3505 ntBASIC6.4□□□□□ -1.38
Ccdc88bQ4QRL3 Elavl4-206ENSMUST00000106601 3775 ntAPPRIS ALT1 TSL 5 BASIC6.4□□□□□ -1.38
Ccdc88bQ4QRL3 Gm37250-201ENSMUST00000194919 2388 ntBASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 Gm43831-201ENSMUST00000200461 2598 ntBASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 Gm26767-201ENSMUST00000180936 4476 ntTSL 5 BASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 Rps15a-ps3-201ENSMUST00000121072 395 ntBASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 Gm45037-201ENSMUST00000207475 673 ntTSL 5 BASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 Gm45409-201ENSMUST00000211486 252 ntBASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 Gm19219-201ENSMUST00000215863 724 ntBASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 CT009748.1-201ENSMUST00000216068 269 ntTSL 5 BASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 Olfr153-201ENSMUST00000217113 1258 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 Dapl1-201ENSMUST00000028369 573 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 Tshb-201ENSMUST00000029450 605 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 Clk1-201ENSMUST00000034868 1796 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
Ccdc88bQ4QRL3 Olfr347-202ENSMUST00000216882 3385 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Ago2-201ENSMUST00000044113 13705 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Gm37320-201ENSMUST00000192781 4953 ntBASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Lpp-202ENSMUST00000078988 15440 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Olfr828-202ENSMUST00000215380 1689 ntAPPRIS P1 TSL 3 BASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Wdr49-203ENSMUST00000204341 1344 ntTSL 5 BASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Gm23747-201ENSMUST00000104228 131 ntBASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Gm23532-201ENSMUST00000104569 112 ntBASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Gm12276-201ENSMUST00000121709 301 ntBASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Gm20399-201ENSMUST00000174652 132 ntBASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Cox6b2-208ENSMUST00000183971 401 ntTSL 5 BASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Gm45162-201ENSMUST00000209013 618 ntBASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Gm45420-201ENSMUST00000211243 425 ntBASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Defb19-201ENSMUST00000053180 394 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Olfr154-201ENSMUST00000099918 1079 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
Ccdc88bQ4QRL3 Pnpla8-201ENSMUST00000043082 13507 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
Retrieved 100 of 76,532 protein–RNA pairs in 83.6 ms