Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm5798-201ENSMUST00000164613 1751 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Ccdc18-201ENSMUST00000047677 5336 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Nsa2-201ENSMUST00000073456 2700 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm45389-201ENSMUST00000211163 3399 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 AY512915-203ENSMUST00000159937 3650 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Usf3-204ENSMUST00000169582 12604 ntAPPRIS P2 TSL 5 BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm38128-201ENSMUST00000192085 3250 ntBASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Rps15a-ps8-201ENSMUST00000117914 387 ntBASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm24627-201ENSMUST00000122764 138 ntBASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm23084-201ENSMUST00000157850 114 ntBASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm22889-201ENSMUST00000158639 58 ntBASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm15099-201ENSMUST00000179833 573 ntTSL 5 BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Vmn2r-ps149-201ENSMUST00000188423 590 ntBASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm29097-201ENSMUST00000190273 422 ntBASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm37571-201ENSMUST00000195048 614 ntTSL 3 BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm42470-201ENSMUST00000198086 251 ntTSL 3 BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Tprkb-208ENSMUST00000200680 814 ntAPPRIS P1 TSL 3 BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm45686-201ENSMUST00000210259 460 ntTSL 5 BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Fth-ps3-201ENSMUST00000210405 358 ntBASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Olfr1153-201ENSMUST00000052300 957 ntBASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm10237-201ENSMUST00000078393 273 ntBASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm4567-202ENSMUST00000190554 1581 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm10668-202ENSMUST00000191073 1581 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 BB287469-201ENSMUST00000110149 1851 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm4027-201ENSMUST00000164838 1850 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 AL589737.1-201ENSMUST00000221163 2763 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 Gm43065-201ENSMUST00000198971 2092 ntBASIC6.58□□□□□ -1.36
Ccdc88bQ4QRL3 D030025E07Rik-203ENSMUST00000197413 2346 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Gm2987-201ENSMUST00000187673 1693 ntBASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Vmn1r90-202ENSMUST00000226264 7796 ntAPPRIS P2 BASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Gm38101-201ENSMUST00000193484 3557 ntBASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Gm23666-201ENSMUST00000158053 116 ntBASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Spin2e-201ENSMUST00000179716 705 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 4831440E17Rik-201ENSMUST00000181942 1028 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Gm8816-201ENSMUST00000182280 1163 ntBASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Gm27828-201ENSMUST00000184108 119 ntBASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Gm44824-201ENSMUST00000207021 229 ntBASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Gm45826-201ENSMUST00000212226 265 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Olfr682-ps1-202ENSMUST00000214399 897 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Zfp850-203ENSMUST00000180502 6163 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Vmn2r-ps47-201ENSMUST00000174515 2557 ntBASIC6.57□□□□□ -1.36
Ccdc88bQ4QRL3 Gm29506-201ENSMUST00000191045 2078 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Gm6205-202ENSMUST00000190001 2515 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Gm9722-201ENSMUST00000194568 802 ntBASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Gm42665-201ENSMUST00000202100 586 ntBASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Gm43941-201ENSMUST00000203303 1073 ntBASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 9330159F19Rik-202ENSMUST00000213489 2992 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 AC130673.2-201ENSMUST00000228091 797 ntBASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 A830019L24Rik-201ENSMUST00000197226 1652 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Rfx3-202ENSMUST00000165566 9146 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Fgf7-202ENSMUST00000110442 2287 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Slc22a30-202ENSMUST00000096269 2255 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Tnrc6b-201ENSMUST00000067689 17332 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Atp7a-201ENSMUST00000055941 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Igf1-202ENSMUST00000095360 7052 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Cmah-202ENSMUST00000110391 9789 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Il5ra-202ENSMUST00000204659 3575 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Gm42614-201ENSMUST00000198724 1554 ntBASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Nptn-205ENSMUST00000176250 4531 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Vmn1r218-205ENSMUST00000227741 9624 ntAPPRIS ALT2 BASIC6.56□□□□□ -1.36
Ccdc88bQ4QRL3 Cep295-208ENSMUST00000161132 7605 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Homer1-208ENSMUST00000109495 813 ntTSL 5 BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm14973-201ENSMUST00000117248 255 ntBASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm11372-201ENSMUST00000117348 570 ntBASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm13118-201ENSMUST00000120402 549 ntBASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm11982-201ENSMUST00000121480 314 ntBASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm25843-201ENSMUST00000122582 314 ntBASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm17155-201ENSMUST00000165969 473 ntBASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm17953-201ENSMUST00000192061 667 ntBASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Olfr1498-ps1-201ENSMUST00000208721 991 ntBASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm44582-201ENSMUST00000209125 445 ntBASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Olfr1495-201ENSMUST00000061669 1089 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Vmn1r35-201ENSMUST00000071414 891 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm38248-201ENSMUST00000193744 5783 ntBASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Dnah8-201ENSMUST00000170651 14583 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Tnip3-201ENSMUST00000114236 3769 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm3239-201ENSMUST00000163525 1751 ntAPPRIS P5 TSL 5 BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Acer3-201ENSMUST00000033020 11340 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm26869-201ENSMUST00000181241 3523 ntTSL 2 BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Zfp72-202ENSMUST00000223163 4153 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Gm597-201ENSMUST00000059937 2887 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Olfr824-203ENSMUST00000215217 3619 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
Ccdc88bQ4QRL3 Olfr578-202ENSMUST00000215606 3665 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 Gm26273-201ENSMUST00000104180 131 ntBASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 Slamf7-201ENSMUST00000111276 1082 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 Gm7219-201ENSMUST00000119619 297 ntBASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 Pate1-201ENSMUST00000170021 389 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 AC123835.1-201ENSMUST00000214362 670 ntBASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 AC091783.5-201ENSMUST00000224928 671 ntBASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 Fzd3-202ENSMUST00000131309 12734 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 Olfr1243-202ENSMUST00000144885 3148 ntAPPRIS P1 TSL 3 BASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 Olfr437-202ENSMUST00000205175 2952 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 Naa16-201ENSMUST00000022597 13223 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 Gm37930-201ENSMUST00000194308 1886 ntBASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 Gm43913-201ENSMUST00000203924 3029 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 CT009733.2-202ENSMUST00000224171 4748 ntBASIC6.54□□□□□ -1.36
Ccdc88bQ4QRL3 Gm15268-201ENSMUST00000118845 352 ntBASIC6.53□□□□□ -1.36
Ccdc88bQ4QRL3 Gm12412-201ENSMUST00000121867 328 ntBASIC6.53□□□□□ -1.36
Ccdc88bQ4QRL3 Gm7497-201ENSMUST00000183064 1003 ntBASIC6.53□□□□□ -1.36
Ccdc88bQ4QRL3 Gm29588-201ENSMUST00000185738 298 ntBASIC6.53□□□□□ -1.36
Retrieved 100 of 76,532 protein–RNA pairs in 341.3 ms