Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm22116-201ENSMUST00000158791 141 ntBASIC6.33□□□□□ -1.4
Trim56Q80VI1 Fth-ps2-201ENSMUST00000168364 516 ntBASIC6.33□□□□□ -1.4
Trim56Q80VI1 Obox3-ps8-201ENSMUST00000177182 960 ntBASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm21815-201ENSMUST00000178213 664 ntBASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm27541-201ENSMUST00000184078 122 ntBASIC6.33□□□□□ -1.4
Trim56Q80VI1 Obox8-201ENSMUST00000184356 1167 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Ms4a4a-201ENSMUST00000188995 836 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm17777-201ENSMUST00000189740 1276 ntBASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm37889-201ENSMUST00000194174 251 ntBASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm37577-203ENSMUST00000194712 991 ntTSL 5 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Trav7d-5-201ENSMUST00000197128 340 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Trav7n-5-201ENSMUST00000199753 340 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 4930500F04Rik-202ENSMUST00000202156 251 ntTSL 3 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm44795-201ENSMUST00000205496 319 ntBASIC6.33□□□□□ -1.4
Trim56Q80VI1 Sult2a7-203ENSMUST00000210034 870 ntTSL 5 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm18487-201ENSMUST00000215826 878 ntBASIC6.33□□□□□ -1.4
Trim56Q80VI1 Amelx-201ENSMUST00000066112 802 ntAPPRIS P4 TSL 1 (best) BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Vmn1r215-201ENSMUST00000072972 1048 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Sh3kbp1-202ENSMUST00000080394 2980 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm26111-201ENSMUST00000083969 106 ntBASIC6.33□□□□□ -1.4
Trim56Q80VI1 Ube2v2-201ENSMUST00000096234 609 ntTSL 3 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm5796-201ENSMUST00000096184 1817 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm43201-201ENSMUST00000195925 3416 ntBASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm29666-201ENSMUST00000189185 8038 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Ncoa7-202ENSMUST00000092610 2590 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Vmn1r201-203ENSMUST00000226965 4741 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Gm21750-201ENSMUST00000098874 1497 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Zfp78-201ENSMUST00000086323 1443 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
Trim56Q80VI1 Ckap5-203ENSMUST00000111337 6384 ntTSL 5 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm45762-201ENSMUST00000212863 2619 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Dnah1-201ENSMUST00000048603 12872 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Obox5-201ENSMUST00000098802 1831 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Smc5-206ENSMUST00000226111 3265 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 1700001G01Rik-201ENSMUST00000125117 1562 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 BB365896-201ENSMUST00000173978 3000 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Zfp937-201ENSMUST00000073782 2797 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Olfr78-204ENSMUST00000217123 4695 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Mctp1-205ENSMUST00000126960 1780 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Nlgn1-201ENSMUST00000075054 4359 ntAPPRIS P3 TSL 5 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Vmn1r6-202ENSMUST00000226689 8453 ntAPPRIS P2 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Mir711-201ENSMUST00000102188 82 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Igkv6-17-201ENSMUST00000103391 377 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm25758-201ENSMUST00000103987 129 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Mir1188-201ENSMUST00000116756 120 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm14793-201ENSMUST00000118739 311 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm11798-201ENSMUST00000119150 421 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Smt3h2-ps-201ENSMUST00000121084 285 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm7670-201ENSMUST00000121272 641 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm14530-201ENSMUST00000122391 333 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm25434-201ENSMUST00000158278 167 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm25348-201ENSMUST00000158961 111 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Vmn1r-ps84-201ENSMUST00000172853 923 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm20647-201ENSMUST00000176396 857 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 1700063H06Rik-201ENSMUST00000183678 445 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm29540-201ENSMUST00000188207 337 ntTSL 3 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 1700040K01Rik-201ENSMUST00000195145 438 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm37445-201ENSMUST00000195318 242 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm43237-201ENSMUST00000196835 1044 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 1700012D16Rik-201ENSMUST00000197231 577 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm36535-201ENSMUST00000198395 511 ntTSL 3 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 AC069561.3-201ENSMUST00000217321 114 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 AC159379.1-201ENSMUST00000218192 620 ntTSL 5 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 AC140381.1-201ENSMUST00000219168 367 ntTSL 2 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm10264-201ENSMUST00000220589 429 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm19441-201ENSMUST00000221545 330 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Prl3d3-202ENSMUST00000223958 675 ntAPPRIS ALT2 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 AC192333.1-201ENSMUST00000224573 376 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 CT010498.1-201ENSMUST00000225382 546 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 AC117202.2-201ENSMUST00000226491 1101 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 AC154239.1-201ENSMUST00000228565 406 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Tshb-201ENSMUST00000029450 605 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Olfr822-201ENSMUST00000080460 942 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Gm22456-201ENSMUST00000082578 125 ntBASIC6.32□□□□□ -1.4
Trim56Q80VI1 Nlrp4a-201ENSMUST00000068767 4259 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Olfr293-202ENSMUST00000214401 2852 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Ceacam5-201ENSMUST00000081907 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Cntn1-201ENSMUST00000000109 5646 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Olfr419-202ENSMUST00000214725 2685 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
Trim56Q80VI1 Ktn1-209ENSMUST00000187262 3913 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
Trim56Q80VI1 AC105407.2-201ENSMUST00000223707 3911 ntBASIC6.31□□□□□ -1.4
Trim56Q80VI1 Far1-202ENSMUST00000067929 4935 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Trim56Q80VI1 Tcf7l2-202ENSMUST00000061496 4053 ntAPPRIS P3 TSL 5 BASIC6.31□□□□□ -1.4
Trim56Q80VI1 Gm43282-201ENSMUST00000201848 2157 ntBASIC6.31□□□□□ -1.4
Trim56Q80VI1 AC155941.5-201ENSMUST00000218925 1505 ntTSL 5 BASIC6.31□□□□□ -1.4
Trim56Q80VI1 Pcdh9-202ENSMUST00000192221 5161 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Trim56Q80VI1 A730004F24Rik-202ENSMUST00000195454 1704 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Trim56Q80VI1 Trbv13-2-201ENSMUST00000103270 340 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
Trim56Q80VI1 Gm14401-203ENSMUST00000108970 948 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
Trim56Q80VI1 Gm13890-201ENSMUST00000117578 390 ntBASIC6.31□□□□□ -1.4
Trim56Q80VI1 Gm11352-201ENSMUST00000119264 517 ntBASIC6.31□□□□□ -1.4
Trim56Q80VI1 Ogt-202ENSMUST00000119299 3840 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
Trim56Q80VI1 Gm23867-201ENSMUST00000122649 274 ntBASIC6.31□□□□□ -1.4
Trim56Q80VI1 Gm16208-201ENSMUST00000128476 471 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Trim56Q80VI1 4930555B12Rik-201ENSMUST00000135444 283 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Trim56Q80VI1 Gm24860-201ENSMUST00000158457 276 ntBASIC6.31□□□□□ -1.4
Trim56Q80VI1 Gm22530-201ENSMUST00000158820 118 ntBASIC6.31□□□□□ -1.4
Trim56Q80VI1 Gm9613-201ENSMUST00000171662 196 ntBASIC6.31□□□□□ -1.4
Trim56Q80VI1 Mir3080-201ENSMUST00000175010 79 ntBASIC6.31□□□□□ -1.4
Trim56Q80VI1 Gm29504-201ENSMUST00000185605 537 ntTSL 5 BASIC6.31□□□□□ -1.4
Trim56Q80VI1 Gm28565-202ENSMUST00000186615 537 ntTSL 5 BASIC6.31□□□□□ -1.4
Retrieved 100 of 76,532 protein–RNA pairs in 92.7 ms