Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm37238-201ENSMUST00000195552 2390 ntBASIC6.83□□□□□ -1.32
Rnf40Q3U319 Gm26764-201ENSMUST00000181175 2596 ntTSL 5 BASIC6.83□□□□□ -1.32
Rnf40Q3U319 Gm9239-201ENSMUST00000186942 2557 ntBASIC6.83□□□□□ -1.32
Rnf40Q3U319 Gm43515-201ENSMUST00000197930 2141 ntBASIC6.83□□□□□ -1.32
Rnf40Q3U319 Arsk-201ENSMUST00000120573 3657 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
Rnf40Q3U319 Mtrr-201ENSMUST00000045827 3692 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
Rnf40Q3U319 Gm42781-201ENSMUST00000201317 2719 ntBASIC6.83□□□□□ -1.32
Rnf40Q3U319 Rfc1-203ENSMUST00000203581 4689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
Rnf40Q3U319 Pou2f1-205ENSMUST00000111427 13050 ntAPPRIS ALT2 TSL 2 BASIC6.83□□□□□ -1.32
Rnf40Q3U319 AU023762-203ENSMUST00000209897 2179 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Olfr537-ps1-201ENSMUST00000209871 2792 ntAPPRIS P1 TSL 3 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Olfr1312-204ENSMUST00000215531 2975 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Dgkb-203ENSMUST00000220990 4085 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Vmn2r44-201ENSMUST00000166499 3660 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Psd3-206ENSMUST00000120071 9203 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 A730017L22Rik-201ENSMUST00000128176 3055 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm7988-201ENSMUST00000196623 2297 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Defb30-201ENSMUST00000100490 307 ntAPPRIS P2 TSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Cdc42se1-202ENSMUST00000107199 652 ntTSL 5 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm12135-201ENSMUST00000119170 466 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm15377-201ENSMUST00000119594 246 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Dnase1-202ENSMUST00000120009 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Vamp7-ps-201ENSMUST00000120334 655 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Anp32b-ps1-201ENSMUST00000122215 758 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm14618-201ENSMUST00000149377 740 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm25433-201ENSMUST00000158283 286 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm25717-201ENSMUST00000158631 353 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm25749-201ENSMUST00000175485 111 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm23402-201ENSMUST00000178130 107 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Vmn2r-ps20-201ENSMUST00000179853 382 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm26189-201ENSMUST00000179879 107 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm26960-201ENSMUST00000182263 412 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Mir7685-201ENSMUST00000183555 62 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm27507-201ENSMUST00000184199 93 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Pou6f2-206ENSMUST00000184299 793 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm19637-201ENSMUST00000185933 579 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm22711-202ENSMUST00000197029 135 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm43926-201ENSMUST00000203978 430 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 AC153537.1-201ENSMUST00000215530 858 ntTSL 5 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm34662-201ENSMUST00000220502 215 ntTSL 3 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 AC166822.1-201ENSMUST00000227667 636 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Ctag2-201ENSMUST00000033524 854 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Olfr965-201ENSMUST00000069342 939 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm10237-201ENSMUST00000078393 273 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Rpl31-ps20-201ENSMUST00000080982 378 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm23939-201ENSMUST00000082880 133 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Defa37-201ENSMUST00000084040 403 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm5416-201ENSMUST00000089628 294 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Gm10805-201ENSMUST00000099710 399 ntBASIC6.82□□□□□ -1.32
Rnf40Q3U319 Olfr1002-201ENSMUST00000099920 957 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Olfr20-202ENSMUST00000120137 2390 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Map2-203ENSMUST00000114012 5119 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Ubr4-201ENSMUST00000097822 15928 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Spata22-201ENSMUST00000117445 3200 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Olfr1564-202ENSMUST00000208645 5213 ntAPPRIS ALT1 TSL 5 BASIC6.82□□□□□ -1.32
Rnf40Q3U319 Olfr1242-203ENSMUST00000143935 2406 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Cenpe-201ENSMUST00000062893 7910 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Zpld1-201ENSMUST00000036412 2589 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm44886-201ENSMUST00000209009 1304 ntTSL 5 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Atp12a-201ENSMUST00000007340 3950 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Olfr479-203ENSMUST00000214599 3248 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Olfr629-202ENSMUST00000213906 2548 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Zwint-202ENSMUST00000105431 2676 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm4922-201ENSMUST00000055107 1950 ntAPPRIS P1 TSL 3 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm45752-201ENSMUST00000212917 3186 ntTSL 5 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 AC165260.6-206ENSMUST00000223884 3698 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Igkv1-117-201ENSMUST00000103317 404 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Igkv5-39-201ENSMUST00000103370 287 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Trav14-3-201ENSMUST00000103589 384 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm15553-201ENSMUST00000118757 430 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 1700041M05Rik-201ENSMUST00000130055 306 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Rnf40Q3U319 AC122263.2-201ENSMUST00000145909 586 ntTSL 3 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm24286-201ENSMUST00000157632 128 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm23079-201ENSMUST00000157847 117 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm24883-201ENSMUST00000158391 281 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm23704-201ENSMUST00000158844 340 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gpx2-ps1-201ENSMUST00000160622 571 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 2810442N19Rik-202ENSMUST00000161583 919 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm20630-201ENSMUST00000177387 551 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Mup-ps11-201ENSMUST00000178040 545 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Mup-ps3-201ENSMUST00000178315 545 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Mir8114-201ENSMUST00000183582 111 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Mir6357-201ENSMUST00000184246 104 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Mir7005-201ENSMUST00000185089 69 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm29348-201ENSMUST00000189555 779 ntTSL 3 BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm38291-201ENSMUST00000193671 259 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm35013-201ENSMUST00000197218 832 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm42925-201ENSMUST00000197359 285 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Igkv15-102-201ENSMUST00000197885 287 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm5711-201ENSMUST00000197896 421 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm26413-202ENSMUST00000198972 127 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm43108-201ENSMUST00000200525 293 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm44380-201ENSMUST00000203125 293 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Olfr797-ps1-201ENSMUST00000203614 415 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm19177-201ENSMUST00000204520 613 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm18791-201ENSMUST00000204611 726 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 AC127254.1-201ENSMUST00000216563 524 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm9068-201ENSMUST00000217393 455 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 AC131720.1-201ENSMUST00000218629 2132 ntBASIC6.81□□□□□ -1.32
Rnf40Q3U319 Gm9293-201ENSMUST00000223096 306 ntBASIC6.81□□□□□ -1.32
Retrieved 100 of 76,532 protein–RNA pairs in 90.3 ms