Protein–RNA interactions for Protein: Q9D3E6

Stag1, Cohesin subunit SA-1, mousemouse

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Stag1Q9D3E6 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Stag1Q9D3E6 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Stag1Q9D3E6 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Stag1Q9D3E6 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Stag1Q9D3E6 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Gm6345-202ENSMUST00000180900 204 ntBASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Gm10819-201ENSMUST00000099988 561 ntBASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Stag1Q9D3E6 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Stag1Q9D3E6 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Stag1Q9D3E6 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Stag1Q9D3E6 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Stag1Q9D3E6 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC20.87■□□□□ 0.93
Stag1Q9D3E6 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Stag1Q9D3E6 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Stag1Q9D3E6 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Stag1Q9D3E6 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Stag1Q9D3E6 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Stag1Q9D3E6 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Stag1Q9D3E6 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Stag1Q9D3E6 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Stag1Q9D3E6 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Stag1Q9D3E6 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Stag1Q9D3E6 Gm13474-201ENSMUST00000122466 815 ntBASIC20.86■□□□□ 0.93
Stag1Q9D3E6 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Stag1Q9D3E6 Gm10459-201ENSMUST00000202708 1155 ntBASIC20.86■□□□□ 0.93
Stag1Q9D3E6 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Stag1Q9D3E6 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Stag1Q9D3E6 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.86■□□□□ 0.93
Stag1Q9D3E6 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Stag1Q9D3E6 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Stag1Q9D3E6 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Gm37025-201ENSMUST00000195159 829 ntBASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Gm7370-201ENSMUST00000219471 767 ntBASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Stag1Q9D3E6 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Stag1Q9D3E6 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Stag1Q9D3E6 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Stag1Q9D3E6 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.83■□□□□ 0.92
Stag1Q9D3E6 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Stag1Q9D3E6 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Stag1Q9D3E6 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Stag1Q9D3E6 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Stag1Q9D3E6 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Stag1Q9D3E6 Gm9731-201ENSMUST00000209480 747 ntBASIC20.82■□□□□ 0.92
Stag1Q9D3E6 Il3ra-202ENSMUST00000223589 738 ntBASIC20.82■□□□□ 0.92
Stag1Q9D3E6 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.82■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms