Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Cdk5rap3Q99LM2 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdk5rap3Q99LM2 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Gm42569-201ENSMUST00000200539 472 ntBASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk5rap3Q99LM2 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk5rap3Q99LM2 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk5rap3Q99LM2 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk5rap3Q99LM2 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cdk5rap3Q99LM2 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.14■□□□□ 0.5
Cdk5rap3Q99LM2 Flg-201ENSMUST00000050758 1488 ntBASIC18.14■□□□□ 0.5
Cdk5rap3Q99LM2 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Gm10418-201ENSMUST00000100943 576 ntBASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Mir8112-201ENSMUST00000184382 131 ntBASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC18.14■□□□□ 0.49
Cdk5rap3Q99LM2 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdk5rap3Q99LM2 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdk5rap3Q99LM2 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdk5rap3Q99LM2 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdk5rap3Q99LM2 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdk5rap3Q99LM2 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms