Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC18.52■□□□□ 0.56
Ccdc28aQ8CEI3 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ccdc28aQ8CEI3 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ccdc28aQ8CEI3 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Ccdc28aQ8CEI3 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Ccdc28aQ8CEI3 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Gm13509-201ENSMUST00000119733 1308 ntBASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc28aQ8CEI3 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 Gm29791-202ENSMUST00000207888 369 ntBASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 AC140264.2-202ENSMUST00000218746 817 ntBASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc28aQ8CEI3 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Gm10033-202ENSMUST00000211874 928 ntBASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc28aQ8CEI3 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 Gm10418-201ENSMUST00000100943 576 ntBASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 Gm38285-201ENSMUST00000192928 922 ntBASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ccdc28aQ8CEI3 Gm18671-201ENSMUST00000214826 683 ntBASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms