Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nup88Q8CEC0 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nup88Q8CEC0 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Wnt10b-205ENSMUST00000226846 1204 ntBASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nup88Q8CEC0 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Nup88Q8CEC0 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Nup88Q8CEC0 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Nup88Q8CEC0 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Nup88Q8CEC0 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Mir1199-201ENSMUST00000117015 119 ntBASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nup88Q8CEC0 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nup88Q8CEC0 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Gm7977-201ENSMUST00000193787 748 ntBASIC20.62■□□□□ 0.89
Nup88Q8CEC0 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Flg-201ENSMUST00000050758 1488 ntBASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nup88Q8CEC0 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms