Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.1■□□□□ 0.49
Trub1Q8C0D0 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trub1Q8C0D0 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trub1Q8C0D0 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trub1Q8C0D0 Gm37519-201ENSMUST00000191687 2210 ntBASIC18.1■□□□□ 0.49
Trub1Q8C0D0 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
Trub1Q8C0D0 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trub1Q8C0D0 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Trub1Q8C0D0 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trub1Q8C0D0 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trub1Q8C0D0 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC18.08■□□□□ 0.49
Trub1Q8C0D0 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trub1Q8C0D0 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trub1Q8C0D0 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trub1Q8C0D0 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC18.08■□□□□ 0.49
Trub1Q8C0D0 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 Gm37292-201ENSMUST00000192062 758 ntBASIC18.08■□□□□ 0.48
Trub1Q8C0D0 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trub1Q8C0D0 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Gm5643-201ENSMUST00000117081 966 ntBASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Gm10653-202ENSMUST00000139570 835 ntBASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trub1Q8C0D0 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trub1Q8C0D0 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Gm43808-201ENSMUST00000202534 2065 ntBASIC18.05■□□□□ 0.48
Trub1Q8C0D0 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trub1Q8C0D0 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms